Section 1
- p++ · front-end to the C compiler
- p-ftp · fast data transfer program
- p-link · whole genome SNP analysis
- p0f · identify remote systems passively
- p10cfgd · remote configuration daemom for Gracilis PackeTen
- p11-kit · List the PKCS#11 modules provided on the system
- p11sak · Manage token keys in a PKCS #11 token repository.
- p11tool · GnuTLS PKCS #11 tool
- p2c · Pascal to C translator, version 1.21alpha-07.Dec.93
- p2cc · Pascal to C translator, version 1.21alpha-07.Dec.93
- p2v-building · How to build virt-p2v from source
- p2v-hacking · extending and contributing to virt-p2v
- p2v-release-notes · virt-p2v Release Notes
- p2wgui · program to convert PGN chess files to webpages
- p3nfsd · NFS-like daemon for Psion 3-series handhelds
- p4 · portable programs for parallel processors - release 1.4
- p4v · a visualization suite for the Vienna Ab-initio Simulation Package (VASP)
- p7zip · Wrapper on 7-Zip file archiver with high compression ratio
- p_scatter · p_scatter
- paargs · wrapper for paexec similar to xargs
- pabrowse · List PulseAudio sound servers on the network
- pacapt · Arch´s pacman-like package manager for some Unices
- pacat · Play back or record raw or encoded audio streams on a PulseAudio sound server
- paccapability · query libalpm capabilities
- paccat · Print pacman package files
- paccheck · check installed packages
- pacconf · query pacman's configuration file
- pacfile · display information about package files
- pacinfo · display package information
- pacini · query pacman-style configuration files
- pacinstall · install/remove alpm packages
- pack · collection of useful tools for Allegro 4 developers
- pack200-openjdk11 · Packages a JAR file into a compressed pack200 file for web deployment.
- pack200-openjdk8 · Packages a JAR file into a compressed pack200 file for web deployment.
- pack_isam · Compresses MySQL database files.
- package · register package user via mailagent
- package-cleanup · clean up locally installed, duplicate, or orphaned packages. A DNF-based shim imitating the original YUM-based package-cleanup utility.
- package-update-indicator · notify about available software updates
- package-update-indicator-prefs · edit preferences for package-update-indicator
- package_crystalsvg · bundle up Crystal SVG sources from a KDE checkout
- packagesearch · Program to search for debian packages
- PACKAGING · notes and best practice for packaging perl 5
- packdbf · a collection of tools for xbase database files
- packer · tool for creating machine images for multiple platforms
- packetdiag · generate packet-header-structure-diagram image file from spec-text file.
- packetdiag3 · generate packet-header-structure-diagram image file from spec-text file.
- packetforge-ng · forge packets: ARP, UDP, ICMP or custom packets.
- packeth · ethernet packet generator
- packETHcli · ethernet packet generator
- packetsender · Network utility for sending and receiving TCP, UDP, SSL packets
- packf · pack messages in nmh folder into a single file
- packihx · A tool to pack Intel hex files for SDCC
- packinit · initialize or update your .package file
- packup
- packxxk · pack TI graphing calculator software files
- paclock · lock/unlock the alpm database
- paclog · filter pacman log entries
- pacman4consoleedit · editor to make pacman4console mazes
- pacmd · Reconfigure a PulseAudio sound server during runtime
- pacote · The JavaScript Package Handler
- pacoxph · Perform Genome-Wide Association Analysis using Cox' Proportional hazards model
- pacpl · Perl Audio Converter, a multi purpose converter/ripper/tagger
- pacquery · A CLI tool to provide JSON of provided pacman package(s).
- pacremove · install/remove alpm packages
- pacrepairdb · fix corrupted database entries
- pacrepairfile · reset properties on alpm-managed files
- pacreport · display a summary of installed packages
- pacs_layout · Generic CTN manual page
- pacsift · query and filter packages
- pacsync · update sync databases
- pact-undocumented · Portable Application Code Toolkit
- pactester · Tool to test proxy auto-config (pac) files.
- pactl · Control a running PulseAudio sound server
- pactrans · install/remove alpm packages
- pacvim · PacVim is pacman game concept with vim command
- pad-file · Pad a FITS file out to the correct size
- padevchooser · PulseAudio Device Chooser
- padre · Perl Application Development and Refactoring Environment
- pads_backannotate · backannotates changes from a PADS engineering change order (ECO) file to schematic
- padsp · PulseAudio OSS Wrapper
- padthv1 · an old-school polyphonic additive synthesizer
- padthv1_jack · an old-school polyphonic additive synthesizer
- paexec · parallel executor, distribute tasks over network or CPUs
- paexec_reorder · reorder sliced output of "paexec -l"
- page · Parser Generator
- page-crunch · frontend to psutil programs, useful to manipulate Postscript and PDF files.
- pageant · PuTTY SSH authentication agent
- pagein · a tool to force swapped out pages back into memory
- pagekite · Make localhost servers publicly visible
- pagelayoutapi · API for the pagelayout LaTeX class
- pageq · SNPP client/server for sending messages to an alpha-numeric pager
- pagesize · Print supported system page sizes
- pagsh.openafs · Creates a new PAG
- pagure · Pagure Documentation Pagure is a light-weight git-centered forge based on pygit2. Features: Resources: Contents:
- pagure-admin · The admin CLI for pagure
- pahole · show or manipulate data structure layout and pretty print raw data
- paintlib-config · get information about the installed version of paintlib
- paintmask_reg · image processing library
- pair-at-a-time · parse an input file into alphanumeric word pairs
- pair_align · Pairwise alignment
- PairSeq.py · Sorts and matches sequence records with matching coordinates across files
- pairtools · pairtools Documentation pairtools is a simple and fast command-line framework to process sequencing data from a Hi-C experiment. pairtools perform various operations on Hi-C pairs and occupy the middle position in a typical Hi-C data processing pipeline:
- Paje · generic visualization tool (Gantt chart and more)
- Paje.app · generic visualization tool (Gantt chart and more)
- pak · quake world/extension pak tool
- pakcs · the Portland Aachen Kiel Curry System
- pal · calendar with events
- pal2nal.pl · use insight from protein alignment for nucleotide alignment
- pal2rgb · convert a palette color TIFF image to a full color image
- palbart · BART enhanced PDP8 crossassembler
- palcomp · palette composer
- paleomix · pipelines and tools for HTS data analyses
- palinear · Perform Genome-Wide Association Analysis using a linear model
- palm-datebook-reminders · generate simple report from Palm Datebook DB
- palm2mhc · Add Palm articles to a MHC repository
- palmdev-prep · Prepare PalmDev trees for use with prc-tools
- palmpythonconfig · set up PalmPython configuration files and directories
- palmtopnm · convert a Palm Bitmap to a PNM image
- palogist · Perform Genome-Wide Association Analysis using a logistic model
- paltohdf · convert between a palette in an HDF file and a raw palett e in a non-HDF file
- pam-dotfile-gen · change password for libpam-dotfile
- pam-panel-icon · A notification area indicator of pam_timestamp status
- pam_abl · query or purge the databases used by the pam_abl module.
- pam_wrapper · A preloadable wrapper to test PAM applications and PAM Modules
- pamaddnoise · add noise to a Netpbm image
- pamaltsat · increase or decrease the saturation of an image using one of several alternative methods.
- paman · PulseAudio Manager
- pamarith · perform arithmetic on two Netpbm images
- pambackground · create a mask of the background area of an image
- pambayer · interpret Bayer patterns
- pambrighten · change a PPM image's Saturation and Value
- pamcat · concatenate Netpbm images
- pamchannel · extract channels from a PAM image
- pamcomp · composite (overlay) two Netpbm images together
- pamcrater · create cratered terrain by fractal forgery
- pamcut · select a rectangular region of a PAM, PBM, PGM, or PPM image
- pamdeinterlace · remove every other row from a PAM/PNM image
- pamdepth · change the depth (color resolution) in a Netpbm image
- pamdice · slice a Netpbm image into many horizontally and/or vertically
- pamditherbw · dither grayscale image to black and white
- pamedge · edge-detect an image
- pamendian · reverse endianness of a Netpbm image
- pamenlarge · Enlarge a Netpbm image N times by duplicating pixels
- pamexec · Execute a shell command on each image in a Netpbm image stream
- pamfile · describe a Netpbm (PAM or PNM) file
- pamfind · Print the locations of all tuples of a certain value in an image
- pamfix · repair a Netpbm image with various corruptions
- pamfixtrunc · replaced by pamfix
- pamflip · flip or rotate a PAM or PNM image
- pamfunc · Apply a simple monadic arithmetic function to a Netpbm image
- pamgauss · create a two-dimensional Gaussian function as a PAM image
- pamgetcolor · display the average colors from specified regions in an image.
- pamgradient · create a four-corner gradient PAM image
- pamhomography · stretch/shrink a quadrilateral region of an image to another quadrilateral shape
- pamhue · change a Netpbm image's hues
- pamix · pavucontrol inspired ncurses based pulseaudio mixer
- pamixer · Pulseaudio command line mixer
- pamlevels · effect a 'levels' transformation
- pamlookup · map an image to a new image by using it as indices into a table
- pammasksharpen · Sharpen an image via an unsharp mask
- pammixinterlace · mix adjacent lines to merge interlaced images
- pammixmulti · blend together multiple PAM images
- pammosaicknit · validate a mosaic knitting pattern
- pamoil · turn a PAM image into an oil painting
- pamon · Play back or record raw or encoded audio streams on a PulseAudio sound server
- pampaintspill · smoothly spill colors into the background
- pamperspective · a reverse scanline renderer for Netpbm images
- pamphletangler · Extract code bits from LaTeX pamphlet files.
- pampi · program to make presentations with Markdown, Pandoc, Impress.
- pampi-nonfree · program to download a few JS and CSS files to user space
- pampick · pick images out of a multi-image Netpbm image stream
- pampop9 · simulate a multi-lens camera such as the Pop9
- pamrecolor · alter colors without affecting luminance
- pamrestack · Rearrange rows of a Netpbm image
- pamrgbatopng · replaced by pamtopng
- pamrubber · a rubber-sheeting utility that stretches an image based on control points
- pamscale · scale a Netpbm image
- pamseq · generate PAM image of a numerical sequence of tuple values
- pamshadedrelief · generate shaded relief image from an elevation map
- pamsharpmap · create map of sharpness in a PNM/PAM image
- pamsharpness · measure the sharpness of a PNM/PAM image
- pamshuffle · Shuffle pixels of a Netpbm image
- pamsistoaglyph · convert a single-image stereogram to a red/cyan anaglyphic image
- pamslice · extract one line of values out of a Netpbm image
- pamsplit · split a multi-image Netpbm file into single-image files
- pamstack · stack planes of multiple PAM images into one PAM image
- pamstereogram · create a single-image stereogram from a PAM depth map
- pamstretch · scale up a PNM or PAM image by interpolating between pixels.
- pamstretch-gen · use pamstretch and pamscale to scale by non-integer values
- pamsumm · Summarize the samples in a Netpbm image arithmetically
- pamsummcol · summarize (sum, average, etc) a Netpbm image by column
- pamtable · print the raster as a table of numerical sample values
- pamtest · test pam configuration
- pamtester · test pluggable authentication module (PAM) facility
- pamthreshold · threshold grayscale image to black and white
- pamtilt · print the tilt angle of a PGM file
- pamtoavs · convert a Netpbm image to an AVS X image
- pamtodjvurle · convert a Netpbm image to DjVu Color RLE format
- pamtofits · convert a Netpbm image into FITS format
- pamtogif · convert a Netpbm image to a GIF image
- pamtohdiff · convert PAM image to horizontal difference image
- pamtohtmltbl · convert pnm/pam visual image to an HTML table
- pamtojpeg2k · convert PAM/PNM image to a JPEG-2000 code stream
- pamtompfont · Convert Netpbm image to Mplayer bitmap font file
- pamtooctaveimg · convert a Netpbm image to a GNU Octave image
- pamtopam · copy PAM image
- pamtopdbimg · convert a Netpbm image to a Palm Pilot Image Viewer PDB Image
- pamtopfm · Convert Netpbm image to PFM (Portable Float Map)
- pamtopng · convert a Netpbm image to PNG
- pamtopnm · convert PAM image to PBM, PGM, or PPM
- pamtoqoi · Convert Netpbm image to QOI format (Quite OK Image format)
- pamtosrf · convert a sequence of Netpbm images to a SRF image file
- pamtosvg · convert a Netpbm image to a SVG (Scalable Vector Graphics) image
- pamtotga · convert a Netpbm image to a TrueVision Targa file
- pamtotiff · convert a Netpbm image to a TIFF file
- pamtouil · convert a PNM or PNM/transparency image into a Motif UIL icon file
- pamtowinicon · convert Netpbm PAM images to a Microsoft Windows icon file
- pamtoxvmini · convert Netpbm image to an XV "thumbnail" picture
- pamtris · triangle rasterizer featuring perspective-correct interpolation of generic vertex attributes and depth buffering
- pamu2fcfg · Configuration tool for the U2F PAM module.
- pamundice · combine grid of images (tiles) into one
- pamunlookup · inverse of pamlookup
- pamusb-agent · pam_usb event handler
- pamusb-check · simulates pam_usb authentication
- pamusb-conf · pam_usb configuration tool
- pamvalidate · validate Netpbm image format
- pamwipeout · replace detail with smooth gradient from one edge to the other
- pamx · display Netpbm image in X Window System window
- pan · read and post Usenet articles
- pan-coherent-diffraction · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-config · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-control-systems · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-control-systems-dev · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-data-reduction-frameworks · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-data-reduction-frameworks-dev · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-diffraction · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-grazing-incidence · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-imaging · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-machine-learning · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-modelling · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-mx · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-powder · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-small-angle-scattering · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-spectroscopy · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-tomography · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- pan-xas · PAN common metapackage helper pan-<metapackage_name> - package information and auto-apt helper
- panache · Portable Application Code Toolkit
- pand · BlueZ Bluetooth PAN daemon
- pandoc · general markup converter
- pandoc-citeproc · filter to resolve citations in a pandoc document.
- pandoc-citeproc-preamble · insert a preamble before Pandoc's bibliography
- pandoc-plantuml · Pandoc filter: converts PlantUML code blocks to PlantUML images
- pandora_agent · Pandora FMS software agent
- panel · The Gnome panel
- panel-daemon · Panel background service.
- panel-test-applets · display installed applets
- panelctl · manual page for panelctl 0.2
- panelui · interface buttons to LinuxCNC or HAL
- panflute-daemon · panflute daemon
- panflute-launch-player · panflute launch player
- pango-list · Pango font enumeration
- pango-querymodules · Module registration utility
- pango-segmentation · Pango text segmentation
- pango-view · Pango text viewer
- panicparse · parses panic stack traces from golang programs
- panlogin · Cisco login script
- pano12info · Panorama Tools Informations
- pano_modify · Change output parameters of project file
- pano_trafo · Transform image coordinates.
- panoinfo · List details about the libpano13 library
- panorama-render · a 3D scene renderer and integrated framework
- pap · client interface to remote printers using Printer Access Protocol
- paper · print paper size information
- paperconf · print paper configuration information
- papercut · simple and extensible NNTP server
- paperkey · extract secret information out of OpenPGP secret keys
- papermill · papermill
- papers · GNOME document viewer The Papers Document Viewer application for the GNOME desktop environment
- papers-previewer · show a printing preview of PDF and DjVu documents
- papers-thumbnailer · create png thumbnails from PDF, DjVu, TIFF documents and Comic Books archives (CBR, CBT, CBZ, CB7)
- paperwork · Manages scanned documents and PDFs
- paperwork-cli · cli interface to paperwork
- paperwork-gtk · Manages scanned documents and PDFs
- paperwork-json · cli interface to paperwork with json output
- paperwork-shell · cli interface to paperwork
- papi_avail · papi_avail utility. file papi_avail.c
- papi_clockres · The papi_clockres utility. file clockres.c
- papi_command_line · executes PAPI preset or native events from the command line.
- papi_component_avail · papi_component_avail utility. file papi_component_avail.c
- papi_cost · papi_cost utility. file papi_cost.c
- papi_decode · papi_decode utility. file papi_decode.c
- PAPI_derived_event_files · Describes derived event definition file syntax.
- papi_error_codes · papi_error_codes utility. file error_codes.c
- papi_event_chooser · papi_event_chooser utility. file event_chooser.c
- papi_hardware_avail · papi_hardware_avail utility. file papi_hardware_avail.c
- papi_hybrid_native_avail · papi_hybrid_native_avail utility. file hybrid_native_avail.c
- papi_mem_info · papi_mem_info utility. file papi_mem_info.c
- papi_multiplex_cost · papi_multiplex_cost utility. file papi_multiplex_cost.c
- papi_native_avail · papi_native_avail utility. file papi_native_avail.c
- papi_version · papi_version utility. file papi_version.c
- papi_xml_event_info · papi_xml_event_info utility. file papi_xml_event_info.c
- papilo · presolver for linear programming problems
- paplay · Play back or record raw or encoded audio streams on a PulseAudio sound server
- pappl · printer application framework
- pappl-makeresheader · resource header utility
- paprass · manager of electronic documents
- paprefs · PulseAudio Preferences dialog
- paps · UTF-8 to PostScript converter using Pango
- papstatus · client interface to remote printers using Printer Access Protocol
- paq8l · file compressor and archiver
- par · filter for reformatting paragraphs
- par.pl · Make and run Perl Archives
- par2 · PAR 2.0 compatible file verification and repair tool.
- par2create · PAR 2.0 compatible file verification and repair tool.
- par2repair · PAR 2.0 compatible file verification and repair tool.
- par2verify · PAR 2.0 compatible file verification and repair tool.
- paraclu-cut.sh · Parametric clustering of genomic and transcriptomic features
- paracode · command line Unicode conversion tool
- ParaFly · parallel command processing using OpenMP
- paragui-config · script to get information about the installed version of ParaGui
- parallel · build and execute shell command lines from standard input in parallel
- parallel-cp · Recursive, parallel copy of directory trees
- parallel-moreutils · run programs in parallel
- parallel-nuke · parallel process kill program
- parallel-rsync · parallel file sync program
- parallel-scp · parallel file upload program
- parallel-slurp · parallel file download program
- parallel-ssh · parallel ssh program
- parallel-sums · Calculate checksums in parallel using multiple algorithms
- parallel_tutorial
- parallelftp · get a file using concurrent ftp sessions
- paramspider · Mining parameters from the dark corners of Web Archives
- paraprof · Opens TAU's performance data viewer.
- parasail_aligner · Development heaaders and static libraries for parasail
- parasail_stats · Development heaaders and static libraries for parasail
- paratrace · Parasitic Traceroute via Established TCP Flows & IPID Hopcount
- paraview · Rendering and displaying program for small and large, three dimensional datasets.
- parcat · cat files or fifos in parallel
- parcellite · Lightweight GTK+ Clipboard Manager
- parceloob · manage your parcels
- parchive · RAID like data recovery for PAR ver 1.0 files
- parchives · Archive Manager for MATE
- parcimonie-torified-gpg · torified gpg wrapper for parcimonie
- parec · Play back or record raw or encoded audio streams on a PulseAudio sound server
- parecord · Play back or record raw or encoded audio streams on a PulseAudio sound server
- parent-id · get the sha1 id of an object associated with the given symbolic id
- pareorder · reorder sliced output of "paexec -l"
- parfive · Python Asyncio Based Downloader
- parform · Symbolic manipulation system
- pargearexam · No manpage for this program, utility or function.
- pargs · get detailed process information
- pari · The PARI calculator
- paris-traceroute · An advanced implementation of traceroute which correctly handles load balancing servers among other things
- Parities · Example of using QuantLib
- parkill · Kill all processes running a specified command
- parl · Binary PAR Loader
- parlatype · minimal audio player for manual speech transcription
- parmed · parameter file editor
- parole · Gstreamer-based media player
- parrec2nii · convert PARREC image to NIfTI
- parrot · Parrot Virtual Machine
- parrot-nqp · Not Quite Perl (6)
- parrot_config · Parrot Configuration
- parrot_cp · a replacement for FCcpFT that provides higher performance when dealing with remote files via FCparrot_runFT.
- parrot_debugger · The Parrot Debugger
- parrot_getacl · get ACL information for Parrot filesystem
- parrot_identity_box · share resources in a heterogeneous, and unreliable computing environment
- parrot_locate · provides the true location of the data stored in a named file.
- parrot_lsalloc · list current status of a space allocation
- parrot_md5 · returns the MD5 checksum of a file, generated on the remote system if possible.
- parrot_mkalloc · create a directory with a space allocation
- parrot_mount · mount new directories inside of a Parrot instance.
- parrot_namespace · run a command in a modified namespace.
- parrot_package_create · generate a package based on the accessed files and the preserved environment variables
- parrot_package_run · repeat a program within the package with the help of FCparrot_runFT
- parrot_run · run a program in the Parrot virtual file system
- parrot_setacl · set ACL information for Parrot filesystem
- parrot_timeout · changes or resets the main timeout for the current parrot session
- parrot_whoami · returns the user's credentials (id and authentication method) from the perspective of the system being accessed.
- parse · Cisco router performance metrics domain agent (PMDA)
- parse-edid · read-edid tools to retrieve and interpret monitor specifications using the VESA VBE DDC protocol
- parse-examl · transform an alignment file in relaxed phylip format into a binary file format that can be read by ExaML
- parse-sdf2 · pgen tool
- parseAlignment · pre-compute probabilities of (observed) reads alignments
- parseblast · Filtering High-scoring Segment Pairs (HSPs) from WU/NCBI BLAST.
- ParseConfig.pm
- ParseDb.py · Repertoire clonal assignment toolkit (Python 3)
- ParseHeaders.py · Parses pRESTO annotations in FASTA/FASTQ sequence headers
- parseIOR · display information about a stringified CORBA IOR
- ParseLog.py · Parses records in the console log of pRESTO modules
- parsePT · Pt-support tool
- parser · Command Line and CGI interface for Parser 3 Language.
- parser3 · Command Line and CGI interface for Parser 3 Language.
- parsergen · A Dylan Parser Generator
- parsero · Audit tool for robots.txt of a site
- parseSNP · utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishes
- parset · set shell variables in parallel
- parsetablegen · pgen tool
- parseval · comparative analysis of two alternative sources of annotation
- parsewiki · transform marked text into HTML, XHTML, Docbook or LaTeX
- parsinsert · Parsimonious Insertion of unclassified sequences into phylogenetic tree
- parsl-globus-auth · authenticate parsl user to globus
- parsl-perf · performance measurements of parsl configuration
- parsl-visualize · run parsl web dashboard
- parsnp · rapid core genome multi-alignment
- parsort · Sort (big files) in parallel
- parsyncfp2 · a MultiHost parallel rsync wrapper
- particleTracks · part of OpenFOAM (The Open Source CFD Toolbox).
- partimage · back up and restore disk partitions
- partit2bed.pl · converts the output of the ChIP-Seq partitioning program to BED format
- partitionmanager · Partition manager for KDE
- party · set OS responses mode
- pas2fpm · The Free Pascal unit to fpmake.pp file generator tool.
- pas2fpm-3.0.0 · The Free Pascal unit to fpmake.pp file generator tool.
- pas2fpm-3.0.4 · The Free Pascal unit to fpmake.pp file generator tool.
- pas2fpm-3.2.0 · The Free Pascal unit to fpmake.pp file generator tool.
- pas2fpm-3.2.2 · The Free Pascal unit to fpmake.pp file generator tool.
- pas2html · generates highlighted html-files from Pascal or Modula-2 source
- pas2jni · Free Pascal Java Native Interface generation tool
- pas2jni-3.0.0 · Free Pascal Java Native Interface generation tool
- pas2jni-3.0.4 · Free Pascal Java Native Interface generation tool
- pas2jni-3.2.0 · Free Pascal Java Native Interface generation tool
- pas2jni-3.2.2 · Free Pascal Java Native Interface generation tool
- pas2js-3.2.2 · Pascal to JavaScript translator based on Free Pascal Compiler (FPC)
- pas2ut · The Free Pascal unit to unit test case conversion tool.
- pas2ut-3.0.0 · The Free Pascal unit to unit test case conversion tool.
- pas2ut-3.0.4 · The Free Pascal unit to unit test case conversion tool.
- pas2ut-3.2.0 · The Free Pascal unit to unit test case conversion tool.
- pas2ut-3.2.2 · The Free Pascal unit to unit test case conversion tool.
- pascal_count · count source lines of code (SLOC)
- pasco · tool to extract information from MS IE cache files
- pasdoc · documentation tool for Pascal source code
- pasmo · Z80 assembler
- pass · stores, retrieves, generates, and synchronizes passwords securely
- pass-audit · A pass(1) extension for auditing your password repository.
- pass-extension-tail · a password-store extension to avoid printing the password
- pass-otp · A pass(1) extension for managing one-time-password (OTP) tokens.
- pass-tail · a password-store extension to avoid printing the password
- pass-tomb · A pass(1) extension that helps to keep the whole tree of password encrypted inside a tomb(1).
- passenger-config · Show configuration settings for Phusion Passenger
- passenger-stress-test · stress tests a Phusion Passenger powered website.
- passim · client control of the local caching server
- passmass · change password on multiple machines
- passt · Unprivileged user-mode network connectivity for virtual machines pasta - Unprivileged user-mode network connectivity for network namespaces
- passt-repair · Helper setting TCP_REPAIR socket options for passt(1)
- passt.avx2 · Unprivileged user-mode network connectivity for virtual machines pasta - Unprivileged user-mode network connectivity for network namespaces
- passwd · change user password
- passwd-in-image · change password of a user inside a disk image file
- passwdehd · changes a user's efsk
- password-gorilla · a password manager
- passwordmaker · Generates and manages passwords.
- pasta · Unprivileged user-mode network connectivity for virtual machines pasta - Unprivileged user-mode network connectivity for network namespaces
- pasta.avx2 · Unprivileged user-mode network connectivity for virtual machines pasta - Unprivileged user-mode network connectivity for network namespaces
- paste · merge lines of files
- pastebinit · command-line pastebin client
- PasteImageIntoImage · part of ANTS registration suite
- paster · pluggable command-line frontend, including commands to setup package file layouts
- paster2.4 · pluggable command-line frontend, including commands to setup package file layouts
- paster2.5 · pluggable command-line frontend, including commands to setup package file layouts
- paster2.6 · pluggable command-line frontend, including commands to setup package file layouts
- paster2.7 · pluggable command-line frontend, including commands to setup package file layouts
- paster3 · pluggable command-line frontend, including commands to setup package file layouts
- pastoob · post and get pastes from pastebins
- pasuspender · Temporarily suspend PulseAudio
- pasystray · PulseAudio controller for the system tray
- pat · patch generator tools
- pat-winlink · (pat) a cross platform Winlink client with basic messaging capabilities
- pat-winlink-configure · opens Pat's configuration file using the system default editor
- pat2dat · collection of useful tools for Allegro 4 developers
- pat2ppm · Converts an image file from PAT to PPM format.
- pat2spi
- patat · Presentations Atop The ANSI Terminal
- patator · multi-purpose brute-forcer
- patbase · patch generator tools
- patch · apply a diff file to an original
- patch-hmm.pl · SNAP module patch-hmm.pl
- patch-metamail · Install a patch to the latest metamail release
- patchage · Graphically connect JACK and ALSA Audio/MIDI ports
- patchedit · Edit headers of a patch according to DEP3
- patchelf · Modify ELF files
- patcher
- patchmatrix · a JACK patchbay
- patchmatrix_mixer · a JACK port mixer
- patchmatrix_monitor · a JACK port monitor
- patchSummary · part of OpenFOAM (The Open Source CFD Toolbox).
- patchview · Without options, show numbered files modified by the patch. With options, behave as filterdiff.
- patchwork · filter for drawing clustered graphs as treemaps
- patcil · patch generator tools
- patclean · patch generator tools
- patcol · patch generator tools
- patdiff · patch generator tools
- patextract · Extract a part of a PNG image file
- patftp · patch generator tools
- patgen · generate patterns for TeX hyphenation
- path2listing · script facilitating the conversion to managing gconf configuration sources with desktop-profiles
- path6 · A versatile IPv6-based traceroute tool
- pathchk · check whether file names are valid or portable
- PathFinder · simple file manager
- pathlib · pathlib Documentation Manipulating filesystem paths as string objects can quickly become cumbersome: multiple calls to os.path.join() or os.path.dirname(), etc. This module offers a set of classes featuring all the common operations on paths in an easy, object-oriented way. This module is best used with Python 3.2 or later, but it is also compatible with Python 2.7. NOTE: SEE ALSO:
- pathoc · a perverse HTTP client