parse-examl1
Transform an alignment file in relaxed phylip format into a binary file format that can be read by examl
Usage
parse-examl -s
sequenceFileName
-n
outputFileName
-m
substitutionModel
[-c]
[-q]
[-h]
Options
-mModel of-
Nucleotide or Amino Acid Substitution:
-
For Binary data use: BIN For DNA data use: DNA For AA data use: PROT
-
-c -
disable site pattern compression
-
-q -
Specify the file name which contains the assignment of models to alignment partitions for multiple models of substitution. For the syntax of this file please consult the manual.
-
-h -
Display this help message.