partit2bed.pl1
Converts the output of the chip-seq partitioning program to bed format
Overview
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partit2bed.pl [options] <ChIP-Part out file>
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where options are:
-h|--help-
Show this stuff
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--db <path> -
Use <path> to locate Chrom Id Storable File 'chro_idx.nstorage'
-t|--track <track>-
BED track name [def: Test-BED]
-d|--desc <desc>-
Description field of the BED header line [def: ChIP-Seq]
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-n <int> -
Chromosome number (BED declaration lines) [def: 0 - all chromosomes]
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-b <int> -
Chromosome start [def:
-1- entire chrom region]
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-e <int> -
Chromosome end [def:
-1- entire chrom region]
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The program converts the output of the ChIP-Seq partitioning program to BED format.