Section 1
- s-nail · send and receive Internet mail
- s-tui · curses-based cpu monitoring
- s1ms2dlf · convert SunONE Messaging Server SMTP log files to the email DLF
- s2cc · Scheme to C compiler
- s2ci · Scheme interpreter
- s2p · a stream editor
- s2r
- s2tc_compress · Compress the image into a S2TC format texture.
- s2tc_decompress · Decompresses the texture into an image
- s2tc_from_s3tc · Convert a S3TC format texture into S2TC format one.
- s3 · simulate a s3 computer
- s3270 · IBM host access tool
- s390x-linux-gnu-addr2line · convert addresses or symbol+offset into file names and line numbers
- s390x-linux-gnu-ar · create, modify, and extract from archives
- s390x-linux-gnu-as · the portable GNU assembler.
- s390x-linux-gnu-c++filt · demangle C++ and Java symbols
- s390x-linux-gnu-dwp · The DWARF packaging utility
- s390x-linux-gnu-elfedit · update ELF header and program property of ELF files
- s390x-linux-gnu-gcc-ar · a wrapper around ar adding the --plugin option
- s390x-linux-gnu-gcc-ar-10 · a wrapper around ar adding the --plugin option
- s390x-linux-gnu-gcc-ar-11 · a wrapper around ar adding the --plugin option
- s390x-linux-gnu-gcc-ar-12 · a wrapper around ar adding the --plugin option
- s390x-linux-gnu-gcc-ar-13 · a wrapper around ar adding the --plugin option
- s390x-linux-gnu-gcc-ar-14 · a wrapper around ar adding the --plugin option
- s390x-linux-gnu-gcc-ar-6 · a wrapper around ar adding the --plugin option
- s390x-linux-gnu-gcc-ar-8 · a wrapper around ar adding the --plugin option
- s390x-linux-gnu-gcc-ar-9 · a wrapper around ar adding the --plugin option
- s390x-linux-gnu-gcc-nm · a wrapper around nm adding the --plugin option
- s390x-linux-gnu-gcc-nm-10 · a wrapper around nm adding the --plugin option
- s390x-linux-gnu-gcc-nm-11 · a wrapper around nm adding the --plugin option
- s390x-linux-gnu-gcc-nm-12 · a wrapper around nm adding the --plugin option
- s390x-linux-gnu-gcc-nm-13 · a wrapper around nm adding the --plugin option
- s390x-linux-gnu-gcc-nm-14 · a wrapper around nm adding the --plugin option
- s390x-linux-gnu-gcc-nm-6 · a wrapper around nm adding the --plugin option
- s390x-linux-gnu-gcc-nm-8 · a wrapper around nm adding the --plugin option
- s390x-linux-gnu-gcc-nm-9 · a wrapper around nm adding the --plugin option
- s390x-linux-gnu-gcc-ranlib · a wrapper around ranlib adding the --plugin option
- s390x-linux-gnu-gcc-ranlib-10 · a wrapper around ranlib adding the --plugin option
- s390x-linux-gnu-gcc-ranlib-11 · a wrapper around ranlib adding the --plugin option
- s390x-linux-gnu-gcc-ranlib-12 · a wrapper around ranlib adding the --plugin option
- s390x-linux-gnu-gcc-ranlib-13 · a wrapper around ranlib adding the --plugin option
- s390x-linux-gnu-gcc-ranlib-14 · a wrapper around ranlib adding the --plugin option
- s390x-linux-gnu-gcc-ranlib-6 · a wrapper around ranlib adding the --plugin option
- s390x-linux-gnu-gcc-ranlib-8 · a wrapper around ranlib adding the --plugin option
- s390x-linux-gnu-gcc-ranlib-9 · a wrapper around ranlib adding the --plugin option
- s390x-linux-gnu-gdc · A GCC-based compiler for the D language
- s390x-linux-gnu-gdc-10 · A GCC-based compiler for the D language
- s390x-linux-gnu-gdc-11 · A GCC-based compiler for the D language
- s390x-linux-gnu-gdc-12 · A GCC-based compiler for the D language
- s390x-linux-gnu-gdc-13 · A GCC-based compiler for the D language
- s390x-linux-gnu-gdc-14 · A GCC-based compiler for the D language
- s390x-linux-gnu-gdc-6 · A GCC-based compiler for the D language
- s390x-linux-gnu-gdc-8 · A GCC-based compiler for the D language
- s390x-linux-gnu-gdc-9 · A GCC-based compiler for the D language
- s390x-linux-gnu-gm2 · The GNU Modula-2 Compiler
- s390x-linux-gnu-gm2-10 · The GNU Modula-2 Compiler
- s390x-linux-gnu-gm2-11 · The GNU Modula-2 Compiler
- s390x-linux-gnu-gm2-12 · The GNU Modula-2 Compiler
- s390x-linux-gnu-gm2-13 · The GNU Modula-2 Compiler
- s390x-linux-gnu-gm2-14 · The GNU Modula-2 Compiler
- s390x-linux-gnu-gm2-9 · The GNU Modula-2 compiler. gm2l - GNU Modula-2 linker subcomponent. gm2lcc - GNU Modula-2 linker subcomponent. gm2lgen - GNU Modula-2 linker subcomponent. gm2lsub - GNU Modula-2 linker subcomponent. gm2m - GNU Modula-2 makefile generator. h2def - Transform a 'C' header file into a Modula-2 definition file.
- s390x-linux-gnu-gnat · GNAT toolbox
- s390x-linux-gnu-gnat-10 · GNAT toolbox
- s390x-linux-gnu-gnat-11 · GNAT toolbox
- s390x-linux-gnu-gnat-12 · GNAT toolbox
- s390x-linux-gnu-gnat-13 · GNAT toolbox
- s390x-linux-gnu-gnat-14 · GNAT toolbox
- s390x-linux-gnu-gnat-6 · GNAT toolbox
- s390x-linux-gnu-gnat-8 · GNAT toolbox
- s390x-linux-gnu-gnat-9 · GNAT toolbox
- s390x-linux-gnu-gnatbind · GNAT toolbox
- s390x-linux-gnu-gnatbind-10 · GNAT toolbox
- s390x-linux-gnu-gnatbind-11 · GNAT toolbox
- s390x-linux-gnu-gnatbind-12 · GNAT toolbox
- s390x-linux-gnu-gnatbind-13 · GNAT toolbox
- s390x-linux-gnu-gnatbind-14 · GNAT toolbox
- s390x-linux-gnu-gnatbind-6 · GNAT toolbox
- s390x-linux-gnu-gnatbind-8 · GNAT toolbox
- s390x-linux-gnu-gnatbind-9 · GNAT toolbox
- s390x-linux-gnu-gnatchop · GNAT toolbox
- s390x-linux-gnu-gnatchop-10 · GNAT toolbox
- s390x-linux-gnu-gnatchop-11 · GNAT toolbox
- s390x-linux-gnu-gnatchop-12 · GNAT toolbox
- s390x-linux-gnu-gnatchop-13 · GNAT toolbox
- s390x-linux-gnu-gnatchop-14 · GNAT toolbox
- s390x-linux-gnu-gnatchop-6 · GNAT toolbox
- s390x-linux-gnu-gnatchop-8 · GNAT toolbox
- s390x-linux-gnu-gnatchop-9 · GNAT toolbox
- s390x-linux-gnu-gnatclean · GNAT toolbox
- s390x-linux-gnu-gnatclean-10 · GNAT toolbox
- s390x-linux-gnu-gnatclean-11 · GNAT toolbox
- s390x-linux-gnu-gnatclean-12 · GNAT toolbox
- s390x-linux-gnu-gnatclean-13 · GNAT toolbox
- s390x-linux-gnu-gnatclean-14 · GNAT toolbox
- s390x-linux-gnu-gnatclean-6 · GNAT toolbox
- s390x-linux-gnu-gnatclean-8 · GNAT toolbox
- s390x-linux-gnu-gnatclean-9 · GNAT toolbox
- s390x-linux-gnu-gnatfind · GNAT toolbox
- s390x-linux-gnu-gnatfind-10 · GNAT toolbox
- s390x-linux-gnu-gnatfind-11 · GNAT toolbox
- s390x-linux-gnu-gnatfind-6 · GNAT toolbox
- s390x-linux-gnu-gnatfind-8 · GNAT toolbox
- s390x-linux-gnu-gnatfind-9 · GNAT toolbox
- s390x-linux-gnu-gnathtml · GNAT toolbox
- s390x-linux-gnu-gnathtml-10 · GNAT toolbox
- s390x-linux-gnu-gnathtml-11 · GNAT toolbox
- s390x-linux-gnu-gnathtml-12 · GNAT toolbox
- s390x-linux-gnu-gnathtml-13 · GNAT toolbox
- s390x-linux-gnu-gnathtml-14 · GNAT toolbox
- s390x-linux-gnu-gnathtml-6 · GNAT toolbox
- s390x-linux-gnu-gnathtml-8 · GNAT toolbox
- s390x-linux-gnu-gnathtml-9 · GNAT toolbox
- s390x-linux-gnu-gnatkr · GNAT toolbox
- s390x-linux-gnu-gnatkr-10 · GNAT toolbox
- s390x-linux-gnu-gnatkr-11 · GNAT toolbox
- s390x-linux-gnu-gnatkr-12 · GNAT toolbox
- s390x-linux-gnu-gnatkr-13 · GNAT toolbox
- s390x-linux-gnu-gnatkr-14 · GNAT toolbox
- s390x-linux-gnu-gnatkr-6 · GNAT toolbox
- s390x-linux-gnu-gnatkr-8 · GNAT toolbox
- s390x-linux-gnu-gnatkr-9 · GNAT toolbox
- s390x-linux-gnu-gnatlink · GNAT toolbox
- s390x-linux-gnu-gnatlink-10 · GNAT toolbox
- s390x-linux-gnu-gnatlink-11 · GNAT toolbox
- s390x-linux-gnu-gnatlink-12 · GNAT toolbox
- s390x-linux-gnu-gnatlink-13 · GNAT toolbox
- s390x-linux-gnu-gnatlink-14 · GNAT toolbox
- s390x-linux-gnu-gnatlink-6 · GNAT toolbox
- s390x-linux-gnu-gnatlink-8 · GNAT toolbox
- s390x-linux-gnu-gnatlink-9 · GNAT toolbox
- s390x-linux-gnu-gnatls · GNAT toolbox
- s390x-linux-gnu-gnatls-10 · GNAT toolbox
- s390x-linux-gnu-gnatls-11 · GNAT toolbox
- s390x-linux-gnu-gnatls-12 · GNAT toolbox
- s390x-linux-gnu-gnatls-13 · GNAT toolbox
- s390x-linux-gnu-gnatls-14 · GNAT toolbox
- s390x-linux-gnu-gnatls-6 · GNAT toolbox
- s390x-linux-gnu-gnatls-8 · GNAT toolbox
- s390x-linux-gnu-gnatls-9 · GNAT toolbox
- s390x-linux-gnu-gnatmake · GNAT toolbox
- s390x-linux-gnu-gnatmake-10 · GNAT toolbox
- s390x-linux-gnu-gnatmake-11 · GNAT toolbox
- s390x-linux-gnu-gnatmake-12 · GNAT toolbox
- s390x-linux-gnu-gnatmake-13 · GNAT toolbox
- s390x-linux-gnu-gnatmake-14 · GNAT toolbox
- s390x-linux-gnu-gnatmake-6 · GNAT toolbox
- s390x-linux-gnu-gnatmake-8 · GNAT toolbox
- s390x-linux-gnu-gnatmake-9 · GNAT toolbox
- s390x-linux-gnu-gnatname · GNAT toolbox
- s390x-linux-gnu-gnatname-10 · GNAT toolbox
- s390x-linux-gnu-gnatname-11 · GNAT toolbox
- s390x-linux-gnu-gnatname-12 · GNAT toolbox
- s390x-linux-gnu-gnatname-13 · GNAT toolbox
- s390x-linux-gnu-gnatname-14 · GNAT toolbox
- s390x-linux-gnu-gnatname-6 · GNAT toolbox
- s390x-linux-gnu-gnatname-8 · GNAT toolbox
- s390x-linux-gnu-gnatname-9 · GNAT toolbox
- s390x-linux-gnu-gnatprep · GNAT toolbox
- s390x-linux-gnu-gnatprep-10 · GNAT toolbox
- s390x-linux-gnu-gnatprep-11 · GNAT toolbox
- s390x-linux-gnu-gnatprep-12 · GNAT toolbox
- s390x-linux-gnu-gnatprep-13 · GNAT toolbox
- s390x-linux-gnu-gnatprep-14 · GNAT toolbox
- s390x-linux-gnu-gnatprep-6 · GNAT toolbox
- s390x-linux-gnu-gnatprep-8 · GNAT toolbox
- s390x-linux-gnu-gnatprep-9 · GNAT toolbox
- s390x-linux-gnu-gnatxref · GNAT toolbox
- s390x-linux-gnu-gnatxref-10 · GNAT toolbox
- s390x-linux-gnu-gnatxref-11 · GNAT toolbox
- s390x-linux-gnu-gnatxref-6 · GNAT toolbox
- s390x-linux-gnu-gnatxref-8 · GNAT toolbox
- s390x-linux-gnu-gnatxref-9 · GNAT toolbox
- s390x-linux-gnu-gprof · display call graph profile data
- s390x-linux-gnu-ld.bfd · The GNU linker
- s390x-linux-gnu-ld.gold · The GNU ELF linker
- s390x-linux-gnu-nm · list symbols from object files
- s390x-linux-gnu-objcopy · copy and translate object files
- s390x-linux-gnu-objdump · display information from object files
- s390x-linux-gnu-ranlib · generate an index to an archive
- s390x-linux-gnu-readelf · display information about ELF files
- s390x-linux-gnu-size · list section sizes and total size of binary files
- s390x-linux-gnu-strings · print the sequences of printable characters in files
- s390x-linux-gnu-strip · discard symbols and other data from object files
- s3backer · FUSE-based single file backing store via Amazon S3
- s3cmd · tool for managing Amazon S3 storage space and Amazon CloudFront content delivery network
- s3d · network display server
- s3d_x11gate · 3d gateway for x11 desktops
- s3dfm · s3d file manager
- s3dosm · gps card application for s3d
- s3dvt · 3d terminal emulator for s3d
- s3fs · FUSE-based file system backed by Amazon S3
- s3gdump
- s3mod · MOD/S3M file player
- s3ql_oauth_client · Obtain Google Storage OAuth2 tokens
- s3ql_verify · Verify data in an S3QL file system
- s3qladm · Manage S3QL file systems
- s3qlcp · Copy-on-write replication on S3QL file systems
- s3qlctrl · Control a mounted S3QL file system
- s3qllock · Make trees on an S3QL file system immutable
- s3qlrm · Fast tree removal on S3QL file systems
- s3qlstat · Gather S3QL file system statistics
- s4cmd · Super Amazon S3 command line tool
- s5 · set up and update S5 presentations
- s51 · 8051, AVR and Z80 microcontrollers simulator for SDCC.
- s51dude · In-System Programmer for 8051 MCUs using usbtiny
- s9
- s9e
- s9sc
- sa · part of ANTS registration suite
- sa-awl · examine and manipulate SpamAssassin's auto-welcomelist db
- sa-check_spamd · spamd monitoring script for use with Nagios, etc.
- sa-heatu · Spamasassin Heuristic Email Address Tracker Utility
- sa-learn-cyrus · Train Spamassassin with spam/ham from user's imap mailboxes
- sabcmd · a command line interface to Sablotron XSLT processor
- sablecc · object-oriented compiler framework
- sablevm · manual page for SableVM - free (LGPL) Java Virtual Machine
- sablot-config · manual page for sablot-config
- sabnzbdplus · a web-based binary newsgrabber with nzb support.
- sabredav · SabreDAV test server
- sabredav21 · SabreDAV test server
- sac2mseed · SAC to miniSEED converter
- sacc · a terminal gopher client
- sacct · displays accounting data for all jobs and job steps in the Slurm job accounting log or Slurm database
- sacct-emulator · client programs to emulate the SLURM (Simple Linux Utility for Resource Management), an open-source cluster resource management and job scheduling.
- sacctmgr · Used to view and modify Slurm account information.
- sacctmgr-emulator · client programs to emulate the SLURM (Simple Linux Utility for Resource Management), an open-source cluster resource management and job scheduling.
- sachesi · Firmware Tools for BlackBerry OS 10
- sada · slave authorization/deauthorization
- sadf · Display data collected by sar in multiple formats.
- sadt · simple DEP-8 test runner
- safe-ldif · verify and dump an LDIF file for backup
- safe-rm · wrapper around the rm command to prevent accidental deletions
- safe-vdash · CLI tool to monitor nodes on the Safe Network
- safe_mysqld · start the mysqld daemon on Unix.
- safecat · safely write data to a file
- safecopy · rescue data from a source that causes IO errors
- safeeyes · Safe Eyes
- saga-depends · calculates SAGA Gis dependencies
- saga_cmd · command-line interface to the System for Automated Geoscientific Analyses
- saga_gui · graphical user interface to the System for Automated Geoscientific Analyses
- sagasu · GNOME tool to find strings in multiple files
- sage · Open Source Mathematical Software
- sahara · Sahara Client This is a client for OpenStack Sahara API. There's a Python API client (the saharaclient module), and a command-line utility (installed as an OpenStackClient plugin). Each implements the entire OpenStack Sahara API. You'll need credentials for an OpenStack cloud that implements the Data Processing API, in order to use the sahara client. You may want to read the OpenStack Sahara Docs -- the overview, at least -- to get an idea of the concepts. By understanding the concepts this library should make more sense. Contents:
- saidar · a curses-based tool for viewing system statistics
- sailcut · a sail design and plotting package
- saint-int-ctrl · support continuous measurements in SAINT
- saint-reformat · imputs missing data and cleans up duplicate entries
- saint-spc-ctrl · run SAINT with control data
- saint-spc-noctrl · run SAINT scoring algorithm for protein-protein interaction data using label free quantitative proteomics data
- saint-spc-noctrl-matrix · run SAINT for a (large-scale, matrix-formatted) dataset without control purification
- sak · Slicing and dicing of FASTA/FASTQ files..
- sakura · A simple but powerful libvte-based terminal emulator.
- salasaga · IDE for producing eLearning
- salasaga_screencapture · tool for capturing screenshots
- salliere · Duplicate Bridge Scorer
- salloc · Obtain a Slurm job allocation (a set of nodes), execute a command, and then release the allocation when the command is finished.
- salloc-emulator · client programs to emulate the SLURM (Simple Linux Utility for Resource Management), an open-source cluster resource management and job scheduling.
- SalmID · rapid Kmer based Salmonella identifier from sequence data
- salmon · highly-accurate, transcript-level quantification estimates from RNA-seq data
- salmon-index · highly-accurate, transcript-level quantification estimates from RNA-seq data
- salmon-quant · highly-accurate, transcript-level quantification estimates from RNA-seq data
- salmon-swim · highly-accurate, transcript-level quantification estimates from RNA-seq data
- salsa · tool to manipulate salsa projects, repositories and group members
- salt · salt
- salt-api · salt-api Command Start interfaces used to remotely connect to the salt master
- salt-call · salt-call Documentation
- salt-cloud · Salt Cloud Command Provision virtual machines in the cloud with Salt
- salt-cp · salt-cp Documentation Copy a file or files to one or more minions
- salt-key · salt-key Documentation
- salt-master · salt-master Documentation The Salt master daemon, used to control the Salt minions
- salt-minion · salt-minion Documentation The Salt minion daemon, receives commands from a remote Salt master.
- salt-pepper · Tool to access a salt-api instance
- salt-proxy · salt-proxy Documentation Receives commands from a Salt master and proxies these commands to devices that are unable to run a full minion.
- salt-run · salt-run Documentation Execute a Salt runner
- salt-ssh · salt-ssh Documentation
- salt-syndic · salt-syndic Documentation The Salt syndic daemon, a special minion that passes through commands from a higher master
- salt-unity · salt-unity Command A unified invocation wrapper around other Salt CLI scripts.
- sam · screen editor with structural regular expressions
- sam-stats · ea-utils: produce digested statistics
- sam.real · screen editor with structural regular expressions
- sam2bed · manual page for sam2bed 2.4.41+dfsg
- sam2p · program to convert raster images to PostScript, PDF, and other formats
- sam2p_pdf_scale · scale a PDF file from sam2p to a given page size
- sam2starch · manual page for sam2starch 2.4.41+dfsg
- samba-log-parser · Samba (winbind) trace parser. options: -h, --help show this help message and exit --traceid ID specify the traceid of the trace records --pid PID specify the pid of winbind client --breakdown breakdown the traces into per traceid files --merge-by-timestamp merge logs by timestamp --flow show the request/sub-request flow traces --flow-compact show the request/sub-request flow traces without dcerpc details
- sambamba · toolkit for working with SAM/BAM files
- sambamba-flagstat · getting flag statistics from BAM file
- sambamba-index · tool for building standard index files for BAM data
- sambamba-markdup · finding duplicate reads in BAM file
- sambamba-merge · tool for merging several BAM files into one
- sambamba-pileup · make a pileup
- sambamba-slice · copying a slice of BAM file
- sambamba-sort · tool for sorting BAM files
- sambamba-view · tool for extracting information from SAM/BAM files
- samblaster · post processing on an aligner (eg. bwa mem):
- samclip · filter SAM file for soft and hard clipped alignments
- samdump2 · retrieves syskey and extract hashes from Windows 2k/NT/XP/Vista SAM.
- same-gnome · a GNOME game
- samFilter · filter nucleotide sequence alignments in SAM files
- samidare · web page update checker
- samizdat-create-database · Samizdat database generation script
- samizdat-drb-server · Samizdat dRuby object cache server
- samizdat-import-feeds · update RSS feeds imported by hosted Samizdat sites
- samizdat-role · Samizdat role management
- saml_assertion_init · ARC client to voms saml service, or arc aa service
- samlsign · sign and verify XML documents
- sammToFoam · is the part of OpenFOAM - a free, open source CFD software.
- samp_hub · SAMP Hub Server
- sample1d · Resampling of 1-D data sets
- samplv1 · an old-school polyphonic sampler synthesizer
- samplv1_jack · an old-school polyphonic sampler synthesizer
- samsung-mdc · Samsung Multiple Display Control Protocol
- samtoh5 · convert a SAM file to cmp.h5 format
- samtom4 · Convert a SAM file generated by blasr(1) to M4 format
- samtools · Utilities for the Sequence Alignment/Map (SAM) format
- samtools-addreplacerg · adds or replaces read group tags
- samtools-ampliconclip · clip reads using a BED file
- samtools-ampliconstats · produces statistics from amplicon sequencing alignment file
- samtools-bedcov · reports coverage over regions in a supplied BED file
- samtools-calmd · calculates MD and NM tags
- samtools-cat · concatenate files together
- samtools-collate · shuffles and groups reads together by their names
- samtools-consensus · produces a consensus FASTA/FASTQ/PILEUP
- samtools-coverage · produces a histogram or table of coverage per chromosome
- samtools-cram-size · list a break down of data types in a CRAM file
- samtools-depad · convert padded BAM to unpadded BAM
- samtools-depth · computes the read depth at each position or region
- samtools-dict · create a sequence dictionary file from a fasta file
- samtools-faidx · indexes or queries regions from a fasta file
- samtools-fasta · converts a SAM/BAM/CRAM file to FASTA or FASTQ
- samtools-fastq · converts a SAM/BAM/CRAM file to FASTA or FASTQ
- samtools-fixmate · fills in mate coordinates and insert size fields.
- samtools-flags · convert between textual and numeric flag representation.
- samtools-flagstat · counts the number of alignments for each FLAG type
- samtools-fqidx · Indexes or queries regions from a fastq file
- samtools-head · view SAM/BAM/CRAM file headers
- samtools-idxstats · reports alignment summary statistics
- samtools-import · converts FASTQ files to unmapped SAM/BAM/CRAM
- samtools-index · indexes SAM/BAM/CRAM files
- samtools-markdup · mark duplicate alignments in a coordinate sorted file
- samtools-merge · merges multiple sorted files into a single file
- samtools-mpileup · produces "pileup" textual format from an alignment
- samtools-phase · call and phase heterozygous SNPs
- samtools-quickcheck · a rapid sanity check on input files
- samtools-reference · extracts an embedded reference from a CRAM file
- samtools-reheader · replaces the header in the input file
- samtools-reset · removes the alignment information added by aligners and updates flags accordingly
- samtools-rmdup · removes duplicate reads (obsolete)
- samtools-samples · prints the samples from an alignment file
- samtools-sort · sorts SAM/BAM/CRAM files
- samtools-split · splits a file by read group.
- samtools-stats · produces comprehensive statistics from alignment file
- samtools-targetcut · cut fosmid regions (for fosmid pool only)
- samtools-tview · display alignments in a curses-based interactive viewer.
- samtools-view · views and converts SAM/BAM/CRAM files
- samtools.pl · helper script for SAMtools
- samu · ninja-compatible build tool
- samuel · symbolic interactive calculator
- sancov · manual page for sancov 19
- sancov-11 · manual page for sancov 11
- sancov-13 · manual page for sancov 13
- sancov-14 · manual page for sancov 14
- sancov-15 · manual page for sancov 15
- sancov-16 · manual page for sancov 16
- sancov-17 · manual page for sancov 17
- sancov-18 · manual page for sancov 18
- sancov-19 · manual page for sancov 19
- sancov-22 · manual page for sancov 22
- sancov-3.9 · manual page for sancov 3.9
- sancov-4.0 · manual page for sancov 4.0
- sancov-6.0 · manual page for sancov 6.0
- sancov-7
- sancov-9 · manual page for sancov 9
- sand_align_kernel · align candidate sequences sequentially
- sand_align_master · align candidate sequences in parallel
- sand_compress_reads · compress sequence data
- sand_filter_kernel · filter read sequences sequentially
- sand_filter_master · filter sequences for alignment in parallel
- sand_runCA · share resources in a heterogeneous, and unreliable computing environment
- sand_runCA_5.4 · share resources in a heterogeneous, and unreliable computing environment
- sand_runCA_6.1 · share resources in a heterogeneous, and unreliable computing environment
- sand_runCA_7.0 · share resources in a heterogeneous, and unreliable computing environment
- sand_uncompress_reads · uncompress sequence data
- sanduhr · an alarm clock, which is designed as a sand-glass
- sane-config · get information about the installed version of libsane
- sane-find-scanner · find SCSI and USB scanners and their device files
- saned · SANE network daemon
- sanitizer · an email virus scanner
- saoimage · X11 window based, interactive, color or halftone image display program for astronomical images
- sapphire · minimal but configurable window manager
- sapserver · SAP and SLP announcment for the VLC Media Player
- sapWatch · various utilities to test receiving and streaming of RTP streams
- sar · Collect, report, or save system activity information.
- sar.sysstat · Collect, report, or save system activity information.
- sar2pcp · import sar data and create a PCP archive
- Sardana · Sardana Tango device server
- sardanatestsuite · Sardana test suite
- sarg · Squid Analysis Report Generator
- sarg-reports · Daily/Weekly/Monthly squid usage reports creation tool
- sarien · No manpage for this program, utility or function.
- sarlacc_schem · convert OrCAD SDT IV files to gEDA format.
- sarlacc_sym · convert OrCAD text libraries to gEDA components
- sarsen · Algorithms and utilities for Synthetic Aperture Radar (SAR) sensors. Enables cloud-native SAR processing via Xarray and Dask.
- sary · manual page for sary 1.0.2
- sash · stand-alone shell with built-in commands
- saslfinger · A utility to collect SMTP AUTH relevant configuration for Postfix
- sasm · simple crossplatform IDE for NASM, GAS and FASM assembly languages
- sass · Sass compiles CSS from SASS files
- sass-convert · sass-convert converts files between CSS
- sass-spec · sass-spec testsuite for Sass implementions
- sassc · Sass compiles CSS from SASS or SCSS files
- sasutil · control program for libsphde project
- sasview · SasView Documentation
- sat · Salut à Toi's backend manager
- sat4j · efficient library of SAT solvers in Java
- SAT_baseline · SAT_baseline
- SAT_llt2rat · SAT_llt2rat
- SAT_look · SAT_look
- satpy_retrieve_all_aux_data · download auxiliary data files used by Satpy
- sats · mpd stop after this song
- sattach · Attach to a Slurm job step.
- sattach-emulator · client programs to emulate the SLURM (Simple Linux Utility for Resource Management), an open-source cluster resource management and job scheduling.
- sattopgm · Weather Daemon gathers NWS EMWIN data
- Save · save revision of a file
- save · save revision of a file
- save-param · Save the monitor parameter when updating usd
- save-session · Saves the current GNOME session (or terminates it)
- save2aecg · converts short-term ECG data into XML-based HL7v3 annotated ECG.
- save2gdf · converts different biomedical signal file formats.
- save2scp · converts short-term ECG data into the EN1094 SCP-ECG format.
- savedump · copy LKCD dump image from raw block device to a filesystem or ftp site.
- savetextmode · save or restore the complete SVGA status for textmode.
- savi · satellite constellation visualisation
- savr · 8051, AVR and Z80 microcontrollers simulator for SDCC.
- sawfish · Sawfish window manager.
- sawfish-capplet · The Sawfish Configurator for the Gnome control-center.
- sawfish-client · Evaluate arbitrary Lisp forms with sawfish.
- sawfish-config · The Sawfish Configurator.
- sawfish-themer · theme creator for Sawfish.
- sawfish-ui · The Sawfish Configurator.
- sawmillthemetodeb · Convert Sawmill theme to Debian package
- sawriter · generate suffix arrays for nucleotide sequences
- SAX2Count · xerces-c sample program
- SAX2Print · xerces-c sample program
- SAXCount · xerces-c sample program
- saxfr · Perform AXFRs and show information about it
- saxon-xslt · Apply a given style sheet to a given source XML document
- saxonb-xquery · command line XQuery processor
- saxonb-xslt · command line XSLT 2.0 processor
- saxoncat · No manpage for this program, utility or function.
- SAXPrint · xerces-c sample program
- say · convert text to audible speech using the GNUstep speech engine
- say-epos · Epos speech client
- saydate · audio date/uptime check
- sayonara · advanced but lightweight audio player and library manager
- sayonara-ctl · control sayonara via dbus
- sayonara-query · obtain information about track and player state
- saytime · audio time check
- sb · XMODEM, YMODEM, ZMODEM file send
- sb-beep · Software Bell for Linux
- sb16ctrl · SoundBlaster16 emulator control program for Bochs
- sb2 · crosscompiling environment
- sb2-config · scratchbox2 configuration tool
- sb2-init · initialize a target for scratchbox2
- sb2-logz · sb2 log postprocessing tool
- sb2-session · manage scratchbox2 sessions
- sb2-show · sb2 diagnostics tool
- sb_bnfilter · a similar interface and purpose to sb_filter
- sb_bnserver · Another server version of hammie.py
- sb_chkopts · Trivial script to check that the user's options file doesn't contain any old-style option names.
- sb_client · A client for sb_xmlrpcserver.py.
- sb_dbexpimp · Bayes database export/import
- sb_evoscore · A shim for integrating Spambayes and Ximian Evolution.
- sb_filter · A hammie front-end to make the simple stuff simple.
- sb_imapfilter · An IMAP filter
- sb_mailsort · an email sorter
- sb_mboxtrain · Train spambayes on all previously-untrained messages in a mailbox.
- sb_server · The primary server for SpamBayes.
- sb_unheader · cleans headers from email messages.
- sb_upload · Read a message or a mailbox file, upload it to a web server and write it
- sb_xmlrpcserver · A server version of hammie.py.
- sbas · sbas
- sbatch · Submit a batch script to Slurm.
- sbatch-emulator · client programs to emulate the SLURM (Simple Linux Utility for Resource Management), an open-source cluster resource management and job scheduling.
- sbattach · UEFI secure boot detached signature tool
- sbcast · transmit a file to the nodes allocated to a Slurm job.
- sbcast-emulator · client programs to emulate the SLURM (Simple Linux Utility for Resource Management), an open-source cluster resource management and job scheduling.
- sbcdec · SBC decoder utility
- sbcenc · SBC encoder utility
- sbcinfo · subband codec (SBC) analyzer
- sbcl
- sbe2mipe · Inserts SBE data into MIPE file CAUTION: DOES NOT WORK AT THE MOMENT!! based on MIPE version v1.1 arguments: * mipe_file * STDIN: tab-delimited list of data, in the following order: PCR ID, SNP ID, SBE ID, SBE oligo, SBE specific, SBE tail, SBE strand, SBE remark
- sbf2psf · No manpage for this program, utility or function.
- sbgp · a simple BGP4 speaker and listener
- sbigtopgm · convert an SBIG CCDOPS file to PGM
- sbkeysync · UEFI secure boot key synchronization tool
- sbmt · manipulate and administer version object base
- sbnc · an modular IRC proxy.
- sbrandy · a portable BBC BASIC VI interpreter
- sbsiglist · Create EFI_SIGNATURE_LIST signature databases