ParseHeaders.py1
Parses presto annotations in fasta/fastq sequence headers
Overview
usage: ParseHeaders.py [--version] [-h] ...
Parses pRESTO annotations in FASTA/FASTQ sequence headers
help:
-
--version -
show program's version number and exit
-
-h, --help -
show this help message and exit
subcommands:
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Annotation operation |
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add
|
Adds field/value pairs to header annotations |
collapse
|
Collapses header annotations with multiple entries |
copy
|
Copies header annotation fields |
delete
|
Deletes fields from header annotations |
expand
|
Expands annotation fields with multiple values |
merge
|
Merge multiple annotations fields into a single field |
rename
|
Renames header annotation fields |
table
|
Writes sequence headers to a table |
output files:
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reheader-pass |
|
|
reads passing annotation operation and modified accordingly. |
|
|
reheader-fail |
|
|
raw reads failing annotation operation. |
|
|
headers |
|
|
tab delimited table of the selected annotations. |
output annotation fields:
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<user defined> |
|
|
annotation fields specified by the |
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).