Section 1
- B · screen editor with structural regular expressions
- b1ee · Bluetooth device testing tool over internet
- b2 · software build tool
- b2m.emacs23 · convert old Emacs Rmail Babyl format to mbox format
- b2m.xemacs20 · No manpage for this program, utility or function.
- b2m.xemacs21 · This program converts a babyl mailbox to a standard unix mailbox.
- b2sum · compute and check BLAKE2 message digest
- b2v · convert a MSDOS, OS/2 bmp file to a V vbm file.
- b3270 · IBM host access tool back end
- b3sum · b3sum
- b4 · Work with code submissions in a public-inbox archive
- b43-fwcutter · Utility for extracting Broadcom 43xx firmware
- b64decode · encode / decode a binary file
- b64encode · encode / decode a binary file
- bab · Baghira's config tray applet
- babel · a converter for chemistry and molecular modeling data files
- babel-config · print babel configuration information
- babel-minify · ES6+ aware minifier based on the Babel toolchain
- babel0A2 · Babel compiler
- babel120 · Babel compiler
- babelfish · No manpage for this program, utility or function.
- babeljs · The compiler for writing next generation JavaScript
- babeljs-7 · The compiler for writing next generation JavaScript
- babeljs-7-node · CLI that works exactly the same as the Node.js CLI, with the added benefit of compiling with Babel presets and plugins before running it
- babeljs-node · CLI that works exactly the same as the Node.js CLI, with the added benefit of compiling with Babel presets and plugins before running it
- babeltrace · Babeltrace Trace Viewer and Converter
- babeltrace-log · Babeltrace Log Converter
- babeltrace2 · Convert or process one or more traces, and more
- babeltrace2-convert · Convert one or more traces to a given format
- babeltrace2-help · Get help for a Babeltrace 2 plugin or component class
- babeltrace2-list-plugins · List Babeltrace 2 plugins and their properties
- babeltrace2-query · Query an object from a Babeltrace 2 component class
- babeltrace2-run · Create a Babeltrace 2 trace processing graph and run it
- babiloo · dictionary viewer with multi-languages support
- baby · create new process from two parents
- babygimp · An icon editor in Perl-Tk
- backblaze-b2 · B2 Command Line Tool
- backbone_global_to_local · part of mauveAligner package alignmentProjector - part of mauveAligner package backbone_global_to_local - part of mauveAligner package bbAnalyze - part of mauveAligner package createBackboneMFA - part of mauveAligner package getAlignmentWindows - part of mauveAligner package getOrthologList - part of mauveAligner package makeBadgerMatrix - part of mauveAligner package mauveToXMFA - part of mauveAligner package mfa2xmfa - part of mauveAligner package projectAndStrip - part of mauveAligner package randomGeneSample - part of mauveAligner package scoreAlignment - part of mauveAligner package stripGapColumns - part of mauveAligner package stripSubsetLCBs - part of mauveAligner package toGrimmFormat - part of mauveAligner package toMultiFastA - part of mauveAligner package toRawSequence - part of mauveAligner package uniqueMerCount - part of mauveAligner package uniquifyTrees - part of mauveAligner package xmfa2maf - part of mauveAligner package
- backdoor-factory · inject predefined or user-defined shellcode in binaries
- backend · backend transmission interfaces
- background-properties · No manpage for this program, utility or function.
- background-properties-capplet · allows you to configure your background screen.
- backintime · a simple backup tool for Linux. This is the command line tool. The graphical tool is backintime-qt.
- backintime-askpass · a simple backup tool for Linux. This is the command line tool for piping passwords into ssh/sshfs and encfs.
- backintime-config · BackInTime configuration files.
- backintime-gnome · a simple backup tool for Gnome.
- backintime-kde4 · a simple backup tool for KDE4.
- backintime-qt · a simple backup tool.
- backintime-qt4 · a simple backup tool.
- backintime-qt_polkit · a simple backup tool for Linux. This is the command line tool. The graphical tool is backintime-qt.
- backport-dsc · backport Debian source packages
- backportpackage · helper to test package backports
- backup-blocks · Slash backup_blocks table manager
- backup-checkallused · check chiark-backup configuration
- backup-conduit-control-applet · GNOME applet to manipulate a Palm PDA
- backup-driver · entry point for cron or inittab to start backups
- backup-labeltape · display or change tape label
- backup-loaded · tell the chiark-backup system what to do with a new tape
- backup-manager-purge · backup-manager's wrapper for outdating files
- backup-manager-upload · Multiprotocol uploader for backup-manager.
- backup-takedown · Bring some system services down for backups
- backup-whatsthis · read an id off a tape and display it
- backupchecker · fully automated backup checker
- backupninja · A lightweight, extensible meta-backup system "a silent flower blossom death strike to lost data."
- backuptodo · Make a backup archive of the todo.txt task file
- bacon · small RSpec clone
- bacteria_tradis · bio-tradis: run a TraDIS analysis
- bacula-bwxconsole · Bacula's management Console
- bacula-console-gnome · Bacula's management Console, GUI version.
- bacula-console-qt · Bacula Administration Tool Console
- bacula-tray-monitor · Bacula's 'System Tray' monitor
- bacula-traymonitor · Bacula's 'System Tray' monitor
- bacula-wxconsole · Bacula's management Console
- baf2taf · Aterm-conversion
- baf2trm · Aterm-conversion
- baffle · Aterm-conversion
- bag · No manpage for this program, utility or function.
- BaitFilter · manual page for BaitFilter-v1.0.6
- BaitFisher · manual page for Error: Parameter file "--version" could not be opened. I guess it does not exist.
- baka-mplayer · A free and open source, cross-platform, libmpv based multimedia player.
- bake · yet another Make replacement
- bake.php · generates skeleton CakePHP applications
- baken · Visualisation of European VHF/UHF and microwave beacons
- balance · A simple TCP proxy with load balancing and failover mechanisms.
- balboa · BAsic Little Book Of Answers
- balboa-backend-console · Backend maintenance console for balboa
- balboa-bench · Run a number of queries against given endpoint
- balboa-help · Help about any command
- balboa-makeman · Create man pages
- balboa-mock · Mock backend
- balboa-query · Obtain information from pDNS about IP ranges
- balboa-rocksdb · RocksDB backend for balboa
- balboa-rocksdump · Dump information from RocksDB
- balboa-serve · Run the balboa frontend
- bali-phy · Bayesian Inference of Alignment and Phylogeny
- bali-phy-pkg · Manage BAli-Phy packages
- bali-subsample · Subsample lines in a file.
- balky · No manpage for this program, utility or function.
- balls · preprocessor for space-filling models in Raster3D molecular graphics package
- BALLView · A free molecular modeling and molecular graphics tool
- ballview · A free molecular modeling and molecular graphics tool
- balsa · the GNOME e-mail client.
- balsa-ab · the GNOME e-mail client.
- balxparse · Barry Project's program to parse firmware ALX files.
- bam · fast and flexible build system
- bam-read · Parse bam files after multi-mapping reads have been assigned and aggregate read mapping information by contig.
- bam12auxmerge · merge two BAM files
- bam12split · project rank pairs produced by bamcollate2 to single ranks per read
- bam12strip · remove rank left by bam12split from read names
- bam2bed · manual page for bam2bed 2.4.41+dfsg
- bam2bed_gnuParallel · manual page for bam2bed_gnuParallel 2.4.41+dfsg
- bam2bed_sge · manual page for bam2bed_sge 2.4.41+dfsg
- bam2bed_slurm · manual page for bam2bed_slurm 2.4.41+dfsg
- bam2fastx · tophat component converting bam directly into fastx
- bam2hints · convert mRNA-to-genome alignments in BAM format into a hint file for AUGUSTUS
- bam2starch · manual page for bam2starch 2.4.41+dfsg
- bam2starch_gnuParallel · manual page for bam2starch_gnuParallel 2.4.41+dfsg
- bam2starch_sge · manual page for bam2starch_sge 2.4.41+dfsg
- bam2starch_slurm · manual page for bam2starch_slurm 2.4.41+dfsg
- bam2wig · Convert bam files to wiggle files. Can be used to generate exonpart hints for AUGUSTUS.
- bam_pipeline · BAM pipeline of PALEOMIX suite
- bam_rmdup_collapsed · filter BAM file for PCR duplicates
- bamadapterclip · remove the adapters marked by bamadapterfind
- bamadapterfind · find adapter contamination in sequencing reads
- bamalignfrac · compute fraction of aligned bases in alignment file
- bamauxmerge · merge information in unmapped and mapped alignment files
- bamauxmerge2 · merge information in unmapped and mapped BAM files
- bamauxsort · filter auxiliary tags from BAM file
- bambisect · find reduced size BAM file on which a program fails
- BambooTracker · YM2608 (OPNA) tracker
- bamcat · concatenate BAM files
- bamchecksort · check sort order of a BAM file
- bamcleanheader.py · remove illegal and malformed fields from a BAM file's header
- bamclipreinsert · reinsert query sequence fragments removed by bamadapterclip
- bamclipXT · reinsert query sequence fragments removed by bamadapterclip
- bamcollate2 · collate reads in a SAM, BAM or CRAM file by name
- bamconsensus · compute rough consensus sequence from alignments
- bamdownsamplerandom · downsample a SAM, BAM or CRAM file
- bamfeaturecount · evaluate alignments produce by an RNA-seq aligner
- bamfillquery · fill query sequences into BAM files
- bamfilteraux · filter auxiliary tags from BAM file
- bamfilterflags · remove entries from BAM files matching a given set of flags
- bamfilterheader · filter auxiliary tags from BAM file
- bamfilterheader2 · filter auxiliary tags from BAM file
- bamfiltermc · remove MC aux fields for reads with unmapped mates
- bamfilterrg · filter read groups from a BAM file
- bamfilterrg.py · filter readgroup(s) from a BAM file
- bamfixflags.py · filter readgroup(s) from a BAM file
- bamfixmateinformation · fix mate pair information in BAM files
- bamflagsplit · sort BAM files by coordinate or query name
- bamgroupreads.py · Group BAM file by read IDs without sorting
- bamheadrg.py · Inject readgroup info
- bamindex · create index for BAM file
- bamintervalcomment · sort BAM files by coordinate or query name
- bamlibs.py · output comma delimited string of read group IDs for each library
- bammarkduplicates · mark duplicate reads/alignments in BAM files
- bammarkduplicates2 · mark duplicate reads/alignments in BAM files
- bammarkduplicatesopt · mark duplicate reads/alignments in BAM files
- bammaskflags · remove flags from alignments
- bammdnm · compute MD and NM fields
- bammerge · merge BAM files
- bamrank · insert the rank (line number) of each alignment as an auxiliary field for tag zz
- bamranksort · sort BAM files by rank
- bamrecalculatecigar · concatenate BAM files
- bamrecompress · recompress BAM file
- bamreset · reset BAM file to unaligned state
- bamseqchksum · produce checksums for primary data in BAM files
- bamsormadup · sort name collated SAM or BAM file by coordinate and mark duplicates or sort SAM or BAM file by query name
- bamsort · sort BAM files by coordinate or query name
- bamsplit · split BAM files
- bamsplitdiv · split BAM file into a set of BAM files
- bamstreamingmarkduplicates · mark duplicate reads
- bamtagconversion · convert old tags to new ones
- bamtofastq · convert SAM, BAM or CRAM files to FastQ
- bamtofastq.py · Convert a coordinate sorted BAM file to FASTQ
- bamtools · toolkit for manipulating BAM (genome alignment) files
- bamvalidate · validate BAM file
- bamview · visualizing genome sequencing read alignment stored in BAM files
- bamzztoname · move the rank of an alignment stored as an auxiliary field to the alignments name
- Bandage · Bioinformatics Application for Navigating De novo Assembly Graphs Easily
- bandit · Python source code security analyzer
- bandwhich
- bandwidthcalc · file transfer time calculator
- bangarang · A KDE Media Player
- bangarangnepomukwriter · Manages Bangarang's media metadata in the Nepomuk store
- banner · print large banner
- banshee · Media Management and Playback application Muinshee - Media Management and Playback application
- banshee-1 · Media Management and Playback application Muinshee - Media Management and Playback application
- bantu · MPD client
- baobab · A graphical disk usage analyzer for the GNOME desktop
- baps · No manpage for this program, utility or function.
- bar · show information about a data transfer
- barcode · a standalone program to convert text strings to printed bars
- Barcode_split · simple tool to split sequencing summary report in per barcodes
- bardecode · barcode recognition tool of the ExactImage toolkit
- barebox-state · Manage Barebox's state in a device tree
- barectf · Generate C99 code that can write native CTF packets
- bareftp · graphical file transfer client
- bareos-tray-monitor · Bareos's 'System Tray' monitor
- baresip · portable and modular command-line SIP user-agent
- barman · Barman Commands Barman has a command-line interface named barman, which is used basically to interact with Barman's backend. Before jumping into each of the sub-commands of barman, be aware that barman has global options available for all of the sub-commands. These options can modify the behavior of the sub-commands and can be used as follows:
- barman-archive-wal · Barman Sub-Commands
- barman-backup · Barman Sub-Commands
- barman-check · Barman Sub-Commands
- barman-check-backup · Barman Sub-Commands
- barman-cloud-backup · Barman-cloud Commands Synopsis Description The barman-cloud-backup script is used to create a local backup of a Postgres server and transfer it to a supported cloud provider, bypassing the Barman server. It can also be utilized as a hook script for copying Barman backups from the Barman server to one of the supported clouds (post_backup_retry_script). This script requires read access to PGDATA and tablespaces, typically run as the postgres user. When used on a Barman server, it requires read access to the directory where Barman backups are stored. If --snapshot- arguments are used and snapshots are supported by the selected cloud provider, the backup will be performed using snapshots of the specified disks (--snapshot-disk). The backup label and metadata will also be uploaded to the cloud. NOTE: IMPORTANT: Parameters Extra options for the AWS cloud provider Extra options for the Azure cloud provider Extra options for GCP cloud provider
- barman-cloud-backup-delete · Barman-cloud Commands Synopsis Description The barman-cloud-backup-delete script is used to delete one or more backups created with the barman-cloud-backup command from cloud storage and to remove the associated WAL files. Backups can be specified for deletion either by their backup ID (as obtained from barman-cloud-backup-list) or by a retention policy. Retention policies mirror those used by the Barman server, deleting all backups that are not required to meet the specified policy. When a backup is deleted, any unused WAL files associated with that backup are also removed. WALs are considered unused if: NOTE: IMPORTANT: Parameters Extra options for the AWS cloud provider Extra options for the Azure cloud provider
- barman-cloud-backup-keep · Barman-cloud Commands Synopsis Description Use this script to designate backups in cloud storage as archival backups, ensuring their indefinite retention regardless of retention policies. This script allows you to mark backups previously created with barman-cloud-backup as archival backups. Once flagged as archival, these backups are preserved indefinitely and are not subject to standard retention policies. NOTE: Parameters Extra options for the AWS cloud provider Extra options for the Azure cloud provider
- barman-cloud-backup-list · Barman-cloud Commands Synopsis Description This script lists backups stored in the cloud that were created using the barman-cloud-backup command. NOTE: Parameters Extra options for the AWS cloud provider Extra options for the Azure cloud provider
- barman-cloud-backup-show · Barman-cloud Commands Synopsis Description This script displays detailed information about a specific backup created with the barman-cloud-backup command. The output is similar to the barman show-backup from the barman show-backup command reference, but it has fewer information. NOTE: Parameters Extra options for the AWS cloud provider Extra options for the Azure cloud provider
- barman-cloud-check-wal-archive · Barman-cloud Commands Synopsis Description Verify that the WAL archive destination for a server is suitable for use with a new Postgres cluster. By default, the check will succeed if the WAL archive is empty or if the target bucket is not found. Any other conditions will result in a failure. NOTE: Parameters Extra options for the AWS cloud provider Extra options for the Azure cloud provider
- barman-cloud-restore · Barman-cloud Commands Synopsis Description Use this script to restore a backup directly from cloud storage that was created with the barman-cloud-backup command. Additionally, this script can prepare for recovery from a snapshot backup by verifying that attached disks were cloned from the correct snapshots and by downloading the backup label from object storage. NOTE: Parameters Extra options for the AWS cloud provider Extra options for the Azure cloud provider Extra options for GCP cloud provider
- barman-cloud-wal-archive · Barman-cloud Commands Synopsis Description The barman-cloud-wal-archive command is designed to be used in the archive_command of a Postgres server to directly ship WAL files to cloud storage. NOTE: This script enables the direct transfer of WAL files to cloud storage, bypassing the Barman server. Additionally, it can be utilized as a hook script for WAL archiving (pre_archive_retry_script). NOTE: Parameters Extra options for the AWS cloud provider Extra options for the Azure cloud provider Extra options for GCP cloud provider
- barman-cloud-wal-restore · Barman-cloud Commands Synopsis Description The barman-cloud-wal-restore script functions as the restore_command for retrieving WAL files from cloud storage and placing them directly into a Postgres standby server, bypassing the Barman server. This script is used to download WAL files that were previously archived with the barman-cloud-wal-archive command. Disable automatic download of .partial files by calling --no-partial option. IMPORTANT: NOTE: Parameters Extra options for the AWS cloud provider Extra options for the Azure cloud provider
- barman-config-switch · Barman Sub-Commands
- barman-config-update · Barman Sub-Commands
- barman-cron · Barman Sub-Commands
- barman-delete · Barman Sub-Commands
- barman-diagnose · Barman Sub-Commands
- barman-generate-manifest · Barman Sub-Commands
- barman-get-wal · Barman Sub-Commands
- barman-keep · Barman Sub-Commands
- barman-list-files · Barman Sub-Commands
- barman-list-servers · Barman Sub-Commands
- barman-list_backups · Barman Sub-Commands
- barman-lock-directory-cleanup · Barman Sub-Commands
- barman-put-wal · Barman Sub-Commands
- barman-rebuild-xlogdb · Barman Sub-Commands
- barman-receive-wal · Barman Sub-Commands
- barman-replication-status · Barman Sub-Commands
- barman-restore · Barman Sub-Commands
- barman-show-backup · Barman Sub-Commands
- barman-show-servers · Barman Sub-Commands
- barman-status · Barman Sub-Commands
- barman-switch-wal · Barman Sub-Commands
- barman-switch-xlog · Barman Sub-Commands
- barman-sync-backup · Barman Sub-Commands
- barman-sync-info · Barman Sub-Commands
- barman-sync-wals · Barman Sub-Commands
- barman-verify · Barman Sub-Commands
- barman-verify-backup · Barman Sub-Commands
- barman-wal-archive · Barman-cli Commands
- barman-wal-restore · Barman-cli Commands
- barnowl · tty‐based zephyr client
- barrendero · A mail spool directory cleaner
- barrierc · Barrier Keyboard/Mouse Client
- barriers · Barrier Keyboard/Mouse Server
- barrnap · rapid ribosomal RNA prediction
- barrybackup · Barry Project's backup program for the BlackBerry handheld
- barrydesktop · Barry Project's control panel for the BlackBerry(R) handheld
- bart · Berkeley Advanced Reconstruction Toolbox
- base16 · base 16/32/64 encode/decode data to standard output
- base16384 · Encode binary files to printable utf16be
- base32 · base32 encode/decode data and print to standard output
- base32hex · base 16/32/64 encode/decode data to standard output
- base32plain · base 16/32/64 encode/decode data to standard output
- base58 · Base58 encode or decode
- base64 · base64 encode/decode data and print to standard output
- base64-decode · Fast BASE64 decoder
- base64-encode · Fast Base 64 encoder
- base64mime · base 16/32/64 encode/decode data to standard output
- base64pem · base 16/32/64 encode/decode data to standard output
- base64plain · base 16/32/64 encode/decode data to standard output
- base64tool · encode files into Base64 encoding and decode Base64 encoded files
- base64url · Base64Url encode or decode FILE, or standard input, to standard output.
- base_evolve · Produce a synthetic alignment by simulating evolution according to
- basefork.pm · Yet Another Base Class for implementing SmokePing Probes
- BaselineFilter · library for LC/MS data management and analysis - tools
- basename · strip directory and suffix from filenames
- basenc · Encode/decode data and print to standard output
- basevars.pm · Another Base Class for implementing SmokePing Probes
- basex · XML database system and XPath/XQuery processor (command line mode)
- basexclient · XML database system and XPath/XQuery processor (client mode)
- basexgui · XML database system and XPath/XQuery processor (graphical mode)
- basexserver · XML database system and XPath/XQuery processor (server mode)
- basez · base 16/32/64 encode/decode data to standard output
- bash · GNU Bourne-Again SHell
- bash-builtins · bash built-in commands, see bash(1)
- bash-minimal · A bash version configured with minimal features
- bash-static · GNU Bourne-Again SHell
- bash3 · GNU Bourne-Again SHell
- bash5tools · Tool for extracting data from .bas.h5 files
- bash5tools.py · Tool for extracting data from .bas.h5 files
- bash_unit · bash unit testing enterprise edition framework for professionals!
- bashacks · collection of useful bash functions for programmers
- bashbro · A Bash-based web file browser
- bashbug · report a bug in bash
- bashburn
- bashdb · bash debugger script
- bashrun · X11 application launcher based on bash
- bashtop · Resource monitor that shows usage and stats
- basic256 · Educational BASIC programming environment for children
- basic_consumer · program that consume dummy data to test Narval data flow.
- Basic_Logging_Service · TAO Basic Telecom Log Service
- basic_producer · program that produce dummy data to test Narval data flow.
- BasicByRef · This line parsed for whatis database.
- basictopvf · utilities to convert various sound formats
- BasiliskII · a free, portable Mac II emulator
- BasiliskII-jit · a 68k Macintosh emulator
- BasiliskII-nojit · a 68k Macintosh emulator
- basket · Note-taking application
- BasketLosses · Example of Modeling Losses Across Correlated Assets
- bat · a cat(1) clone with syntax highlighting and Git integration.
- bat2gts · takes a bathymetry file (three columns: longitude, latitude (degree), depth (meters)) and generates a GTS depth file for the given domain.
- batcat · a cat(1) clone with syntax highlighting and Git integration.
- batch · queue, examine, or delete jobs for later execution
- batch_crop · crop a set of images
- batch_image_convert · use VIPS to convert a set of images to a new type
- batch_rubber_sheet · warp a set of images with a rubber-sheet transformation
- batdiff · Diff a file against the current git index, or display the diff between two files.
- batgrep · Quickly search through and highlight files using ripgrep.
- batman · Read system manual pages (man) using bat as the manual page formatter.
- BatMon · Battery monitor
- batmon · Battery monitor for GNUstep
- batmon_applet · No manpage for this program, utility or function.
- batpipe · A less (and bat) preprocessor for viewing more types of files in the terminal.
- bats · Bash Automated Testing System
- batsignal · battery monitor daemon
- battery-graph · Show a graph of the battery charge
- battery-log · Extract battery statistics
- battery_applet · Battery Charge Monitor Applet for the GNOME panel.
- batwatch · Watch for changes in files or command output, and print them with bat.
- bauble · software application to manage a collection of botanical specimens
- bauble-admin · create bauble's database and change some of its properties
- bayes · No manpage for this program, utility or function.
- bayesol · a Bayes solution calculator for use with dbacl.
- bayonne · GNU Telephony telephony server.
- baz · arch command line client tool
- baz_load_dirs · Import upstream archives into tla/arch,darcs or git and handle renames
- bazel · tool to automate software builds and tests
- bazel-3 · tool to automate software builds and tests
- bazel-4 · tool to automate software builds and tests
- bb · an ASCII-art demo
- bb-ack.cgi · Xymon CGI script to acknowledge alerts
- bb-csvinfo.cgi · CGI program to show host information from a CSV file
- bb-datepage.cgi · Xymon CGI script to view pre-built reports by date
- bb-eventlog.cgi · CGI program to report the Xymon eventlog
- bb-findhost.cgi · Xymon CGI script to find hosts
- bb-hist.cgi · CGI program to display service history
- bb-rep.cgi · CGI front-end to bbgen reporting
- bb-replog.cgi · CGI program to report service availability log
- bb-snapshot.cgi · CGI program to rebuild the Xymon webpages for a specific point in time.
- bb-webpage · Utility to show a webpage using header and footer
- bb-webpage.cgi · Utility to show a webpage using header and footer
- bb_snd_server · No manpage for this program, utility or function.
- bbAnalyze · part of mauveAligner package alignmentProjector - part of mauveAligner package backbone_global_to_local - part of mauveAligner package bbAnalyze - part of mauveAligner package createBackboneMFA - part of mauveAligner package getAlignmentWindows - part of mauveAligner package getOrthologList - part of mauveAligner package makeBadgerMatrix - part of mauveAligner package mauveToXMFA - part of mauveAligner package mfa2xmfa - part of mauveAligner package projectAndStrip - part of mauveAligner package randomGeneSample - part of mauveAligner package scoreAlignment - part of mauveAligner package stripGapColumns - part of mauveAligner package stripSubsetLCBs - part of mauveAligner package toGrimmFormat - part of mauveAligner package toMultiFastA - part of mauveAligner package toRawSequence - part of mauveAligner package uniqueMerCount - part of mauveAligner package uniquifyTrees - part of mauveAligner package xmfa2maf - part of mauveAligner package
- bbappconf · configuration tool for blackbox application windows
- bbcheck · run automated tests on BitBabbler hardware RNG devices
- bbcmd · Run a Xymon command with environment set
- bbcombotest · Xymon combination test tool
- bbctl · query and control tool for BitBabbler hardware RNG devices
- bbdate · display the current date in a Blackbox style window
- bbdb-areacode-split · Looks for phone numbers in your .bbdb
- bbdb-areacode-split.pl · Looks for phone numbers in your .bbdb
- bbdb-cid · Caller-ID-logger
- bbdb-cid.pl · Caller-ID-logger
- bbdb-srv · Converts Mail-Headers to an Emacs-Lisp String.
- bbdb-srv.pl · Converts Mail-Headers to an Emacs-Lisp String.
- bbdb-unlazy-lock · Removes crap from lazy-lock from your .bbdb
- bbdb-unlazy-lock.pl · Removes crap from lazy-lock from your .bbdb
- bbdigest · calculate message digests
- bbduk.sh · Filters, trims, or masks reads with kmer matches to an artifact/contaminant file
- bbe · binary block editor
- bbFilter · this is a part of mauveAligner package
- bbgen · Xymon webpage generator
- bbhostgrep · pick out lines in bb-hosts
- bbhostshow · output the full bb-hosts file
- bbimage · tool to create filesystem images for BitBake
- bbkeys · a general XWindow keygrabber
- bbkeysconf.pl · a general XWindow keygrabber
- bbl2bib · convert thebibliography environment to a bib file
- bblaunch · launch manipulated windows under blackbox.
- bbmail · mailbox flag for X
- bbmap.sh · Fast and accurate splice-aware read aligner.
- bbnorm.sh · Kmer-based error-correction and normalization tool
- bbox · prints out the bounding box of a rawppm or rawpbm image
- bboxx · The program outputs the page number and the Bounding Box parameters for every page in the file filename, by postprocessing the output from the gs bbox device.
- bbpager · pager for the Blackbox window manager
- bbpal · No manpage for this program, utility or function.
- bbppp · a ppp link manager for the Blackbox window manager
- bbqsql · SQL Injection Exploitation Tool
- bbretest-net.sh · Xymon network re-test tool
- bbrun · An elegant tool for the Blackbox window manager that runs commands
- bbsload · system load tool for Blackbox
- bbtest-net · Xymon network test tool
- bbtime · Display the time in a small blackbox style window
- bbvirt · hotplug BitBabbler devices into libvirt managed domains
- bc · An arbitrary precision calculator language
- bc-adapter · Generic adapter for ToolBus
- bcal · Storage expression calculator.
- bcalm · de Bruijn compaction in low memory
- bcat · Programs for audio and speech manipulation
- bcbio_nextgen
- bcc · Bruce's C compiler
- bccmd · Utility for the CSR BCCMD interface
- bcfg2 · Bcfg2 client tool
- bcftools · utilities for variant calling and manipulating VCFs and BCFs.
- bcharge · program to set BlackBerry handhelds to 500mA
- bchscheme · Scheme development environment
- bchunk · CD image format conversion from bin/cue to iso/cdr
- bclock · round X clock with bezier curve hands
- bcm43xx-fwcutter · extract firmware from Broadcom 43xx drivers
- bCNC · GRBL CNC command sender, autoleveler and g-code editor
- bcomps · biconnected components filter for graphs
- bconsole · Bareos's management Console
- bcp · extract subsets of Boost
- bcpp · make C++ beautifier
- bcrontab · Manage users crontab files
- bcrypt · blowfish file encryption
- bcsh · a shell (command interpreter) with C-like syntax
- bct_dump · tegra BCT disassembly tool
- bd · quickly go back to a specific parent directory in bash
- bd_info · show BD disc info
- bd_list_titles · List the titles and title info of a BD disc
- bd_splice · Find and splice BD disc clips together into destination file
- bdbvu · simple GUI tool to browse Berkeley DB databases
- bdd · Mutli Reduced Ordered Binary Decision Diagrams
- bdebstrap · YAML config based multi-mirror Debian chroot creation tool
- bdeinfo · determines information about a BitLocker Drive Encrypted (BDE) volume
- bdemount · mounts a BitLocker Drive Encryption (BDE) encrypted volume
- bdepend · create Bigloo dependencies in makefiles
- bdf2psf · convert a BDF font to PSF format for the Linux console
- bdf2sfd · BDF to SFD converter
- bdfimplode · Convert a BDF font into GNU Unifont .hex format
- bdfindex · No manpage for this program, utility or function.
- bdfresize · Resize BDF Format Font
- bdftobogl · bogl/bterm font convertor
- bdftogd · programs to convert between gd and other graphics formats
- bdftogd-gif · No manpage for this program, utility or function.
- bdftopcf · convert X font from Bitmap Distribution Format to Portable Compiled Format
- bdftops · Convert X11 font from BDF to PostScript Type 1 format
- bdftruncate · generate truncated BDF font from ISO 10646-1-encoded BDF font
- bdgbroadcall · Fine-tuning script to call broad peaks from a single bedGraph track for scores
- bdgcmp · Calculate scores using certain method by comparing a bedGraph file from treatment and a file from control representing local bias
- bdgdiff · Naive call differential peaks from 4 bedGraph tracks for scores
- bdgpeakcall · Naive call peaks from a single bedGraph track for scores
- bdii-update · the bdii update process
- bdump · visualization of biniou data
- bdy · boundary curve finder
- be · distributed bug tracking from the command line
- beads · 2D gel electrophoresis spot detection
- beagle · Genotype calling, genotype phasing and imputation of ungenotyped markers
- beagle-config · command-line interface to Beagle configuration
- beagle-info
- beagle-ping
- beagle-query · search your personal information space
- beagle-search
- beagle-settings
- beagle-shutdown · cleanly shutdown the Beagle daemon
- beagle-status · repeatedly display Beagle status
- beagled · the Beagle desktop search daemon
- beaglefs · mount a filesystem representing a beagle query
- bean-bake · bake a static web view of a Beancount ledger
- bean-check · parse and check a Beancount ledger
- bean-doctor · Beancount debugging tool
- bean-example · generate a randomized Beancount example file
- bean-extract · extract Beancount transactions from bank statements and similar documents
- bean-file · file and rename Beancount input documents after transaction extraction
- bean-format · pretty print and align a Beancount ledger
- bean-identify · identify Beancount ledger for transaction extraction
- bean-price · fetch from the internet commodity prices for Beancount processing
- bean-query · interactive shell for the Beancount Query Language
- bean-report · produces various accounting reports from a Beancount ledger
- bean-sql · convert a Beancount ledger to an SQL database
- bean-web · simple Web interface to a Beancount ledger
- beanstalkd · simple, fast work queue
- bear · generate a compilation database for Clang tooling
- bear-citnames · deduce command semantic
- bear-intercept · intercept command executions in user space.
- beast · Music composition and modular synthesis application.
- beast-0.6.2 · Graphical program to simulate audio synthesis and compose music.
- beast-0.6.6 · Music composition and modular synthesis application.
- beast-0.7.4 · Music composition and modular synthesis application.
- beast-mcmc · Bayesian evolutionary analysis sampling trees
- beast2-mcmc · Bayesian MCMC phylogenetic inference
- beauti · Bayesian Evolutionary Analysis Utility
- beauti2 · matches beast2-mcmc
- beav · binary file editor and viewer
- bed2bed_display · Convert BED file to BED format suitable for displaying ChIP-seq peaks.
- bed2sga · Convert BED format into SGA format.
- bed_to_juncs · tophat component to convert junctions in BED format
- bedextract · manual page for bedextract 2.4.41+dfsg
- bedmap · manual page for bedmap 2.4.41+dfsg
- bedops · manual page for bedops 2.4.41+dfsg
- bedops-starch · manual page for bedops-starch 2.4.41+dfsg
- beef · Flexible Brainfuck interpreter
- beep · beep the pc speaker any number of ways
- beep-media-player · an audio player for X.
- beep-media-player-2 · Audio Player
- beepcore-c-config · script to get information about the installed version of beepcore-c
- beer · Graphical frontend to SAFT
- beet · music tagger and library organizer
- beforelight · screen saver
- beid-pkcs11-tool · generic smart card utility
- beid-tool · generic smart card utility
- bel · open a shell or execute a command on a remote computer through several machines
- bel-resources · Command Line Interface for BEL Resources
- belenios-tool · election management tool
- bell-properties · No manpage for this program, utility or function.
- bell-properties-capplet · No manpage for this program, utility or function.