ParseLog.py1

help:

--version

show program's version number and exit

-h, --help

show this help message and exit

standard arguments:

-o OUT_FILES [OUT_FILES ...]

Explicit output file name(s). Note, this argument cannot be used with the --failed, --outdir, or --outname arguments. If unspecified, then the output filename will be based on the input filename(s). (default: None)

--outdir OUT_DIR

Specify to changes the output directory to the location specified. The input file directory is used if this is not specified. (default: None)

--outname OUT_NAME

Changes the prefix of the successfully processed output file to the string specified. May not be specified with multiple input files. (default: None)

--delim DELIMITER DELIMITER DELIMITER

A list of the three delimiters that separate annotation blocks, field names and values, and values within a field, respectively. (default: ('|', '=', ','))

parsing arguments:

-l RECORD_FILES [RECORD_FILES ...]

List of log files to parse. (default: None)

-f FIELDS [FIELDS ...]

List of fields to collect. The sequence identifier may be specified using the hidden field name "ID". (default: None)

output files:

table

tab delimited table of the selected annotations.

output annotation fields:

<user defined>

annotation fields specified by the -f argument.