parsinsert1

Overview

parsinsert [options] <insert_sequences>

Perform Insertion of Sequences into Given Tree

-m <mask file> - read mask from this file

-s <tree sequences> - read core tree sequences from this file

(default: PI_Tree.fasta)

-t <tree file> - read core tree from this file

(default: PI_Tree.tree)

-x <tree taxonomy> - read core tree taxomony from this file

-o <output file> - output taxonomy for each insert sequence to this file

(default: PI_Results.log)

-l [-|<log file>] - create log file (default is ParsInsert.log)

-n# - number of best matches to display

-c# - percent threshold cutoff

-p - print node comments in newick file

-D# - print branch lengths using # decimal places tree sequence file: PI_Tree.fasta