Section 1

cmtk-fib2image · Draw image from point coordinates of fiber tracks from .fib file.
cmtk-fibxform · Apply coordinate transformations to point coordinates in .fib file.
cmtk-film · Fix interleaved motion using inverse interpolation
cmtk-filter · Filter a volume image
cmtk-fit_affine_dfield · Fit Affine Transformation to Nonrigid Transformation
cmtk-fit_affine_xform · Fit Single Affine Transformation to Concatenated List
cmtk-fit_affine_xform_landmarks · Fit Affine Transformation to Landmarks
cmtk-fit_spline_dfield · Deformation Field to Transformation
cmtk-fit_spline_xform · Fit Single B-Spline Transformation to Concatenated Transformation List
cmtk-fview · Fusion viewer.
cmtk-geomatch · Check whether the geometries (e.g., grid dimensions, pixel sizes, spatial coordinates) or two or more images match.
cmtk-glm · General Linear Model
cmtk-gmm · Gaussian mixture model segmentation
cmtk-gregxform · Apply coordinate transformations to lists of point coordinates
cmtk-groupwise_affine · Affine population registration
cmtk-groupwise_init · Affine initialization for groupwise registration
cmtk-groupwise_warp · Nonrigid population registration
cmtk-hausdorff · Hausdorff Distance.
cmtk-histogram · Image histogram
cmtk-imagemath · Image operations
cmtk-interleaved_bad_slices · Find bad slices in a time series of interleaved images (e.g., a resting-state fMRI series).
cmtk-iterative_shape_averaging
cmtk-jidb · Fix interleaved motion using joint iterative deblurring
cmtk-levelset · Levelset segmentation
cmtk-lmsba · Local voting.
cmtk-lsba · Local voting.
cmtk-lvote · Local voting.
cmtk-make_initial_affine · Initialize affine transformation
cmtk-mat2dof · Matrix to degrees of freedom
cmtk-mcaffine · Multi-channel affine registration
cmtk-mcwarp · Multi-channel nonrigid registration
cmtk-mk_adni_phantom · Generate ADNI phantom image
cmtk-mk_analyze_hdr · Make Analyze header file
cmtk-mk_nifti_hdr · Make NIFTI header file
cmtk-mk_phantom_3d · Generate phantom image
cmtk-mrbias · MR Image Intensity Bias Field Correction
cmtk-overlap · Overlap computation
cmtk-probe · Probe image data.
cmtk-pxsearch · Search image neighborhoods for pixels.
cmtk-reformatx · Volume reformatter
cmtk-registration · Rigid and affine registration
cmtk-registrationx · Rigid and affine registration
cmtk-regress · Regression
cmtk-reorient · Reorientation
cmtk-sba · Shape-based Averaging of label images
cmtk-sbai · Shape-Based Averaging and interpolation of label images
cmtk-sequence · Value sequence
cmtk-similarity · Image similarity
cmtk-split · Split images
cmtk-statistics · Image statistics
cmtk-stream_pixels · Stream pixel data from one or more images to Standard Output.
cmtk-streamxform · Apply coordinate transformation to point coordinates from text stream.
cmtk-sympl · Symmetry plane computation
cmtk-symplx · Symmetry plane computation
cmtk-ttest · T-tests
cmtk-unsplit · Unsplit images
cmtk-unwarp_image_phantom · Create transformation to unwarp an image based on a phantom description
cmtk-vol2csv · Compute regional volumes and write to CSV file.
cmtk-volume_injection · Volume injection
cmtk-volume_reconstruction · Volume reconstruction
cmtk-vtkxform · Apply coordinate transformation to point coordinates in VTK file.
cmtk-warp · B-spline nonrigid registration
cmtk-warp2ps · Deformation to PostScript
cmtk-warpx · B-spline nonrigid registration
cmtk-xform2dfield · Transformation to Deformation Field
cmtk-xform2itk · Convert affine transformations to ITK format.
cmtk-xform2scalar · Extract scalar measures from transformations and deformation fields
cmucl · CMU Common Lisp programming environment
cmucl-lisp · CMU Common Lisp
cmucl-run · wrapper script to execute cmucl fasls natively
cmus · C* Music Player
cmus-remote · control cmus
cmuwmtopbm · convert a CMU window manager bitmap into a PBM image
Cn3D · a 3-dimensional viewer for biological molecules
Cn3D-3.0 · a 3-dimensional viewer for biological molecules
cnee · record, replays or distributes X11 data
cnetworkmanager · Command-line client for NetworkManager.
cnetz · http://osmocom-analog.eversberg.eu/docs/
cnetz_magnetic · http://osmocom-analog.eversberg.eu/docs/
cnetz_memory_card_generator · http://osmocom-analog.eversberg.eu/docs/
cnetz_sim · http://osmocom-analog.eversberg.eu/docs/
cnid_index · check and repair Netatalk CNID database indexes
cnn · a fast unix command line interface to WWW services
cnrun
cnt · Manage systemd-nspawn containers
cntlm · authenticating HTTP(S) proxy with TCP/IP tunneling and acceleration
cntraining · character normalization training for Tesseract
cntsh · Manage systemd-nspawn containers (shell)
cnvgrib1to2 · Convert a GRIB1 file to GRIB2 format
cnvgrib2to1 · Convert a GRIB2 file to GRIB1 format
cnvkit · a command-line toolkit for copy number analysis.
cnvkit-access · List the locations of accessible sequence regions in a FASTA file.
cnvkit-antitarget · Derive off-target ("antitarget") bins from target regions.
cnvkit-autobin · Quickly calculate reasonable bin sizes from BAM read counts.
cnvkit-batch · Run the complete CNVkit pipeline on one or more BAM files.
cnvkit-bintest · Test for single-bin copy number alterations.
cnvkit-breaks · List the targeted genes in which a copy number breakpoint occurs.
cnvkit-call · Call copy number variants from segmented log2 ratios.
cnvkit-coverage · Calculate coverage in the given regions from BAM read depths.
cnvkit-diagram · Draw copy number (log2 coverages, segments) on chromosomes as a diagram. If both the raw probes and segments are given, show them side-by-side on each chromosome (segments on the left side, probes on the right side).
cnvkit-export · Convert CNVkit output files to another format.
cnvkit-fix · Combine target and antitarget coverages and correct for biases. Adjust raw coverage data according to the given reference, correct potential biases and re-center.
cnvkit-genemetrics · Identify targeted genes with copy number gain or loss.
cnvkit-heatmap · Plot copy number for multiple samples as a heatmap.
cnvkit-import-picard · Convert Picard CalculateHsMetrics tabular output to CNVkit .cnn files. The input file is generated by the PER_TARGET_COVERAGE option in the CalculateHsMetrics script in Picard tools. If 'antitarget' is in the input filename, the generated output filename will have the suffix '.antitargetcoverage.cnn', otherwise '.targetcoverage.cnn'.
cnvkit-import-rna · Convert a cohort of per-gene log2 ratios to CNVkit .cnr format.
cnvkit-import-seg · Convert a SEG file to CNVkit .cns files.
cnvkit-import-theta · Convert THetA output to a BED-like, CNVkit-like tabular format. Equivalently, use the THetA results file to convert CNVkit .cns segments to integer copy number calls.
cnvkit-metrics · Compute coverage deviations and other metrics for self-evaluation.
cnvkit-reference · Compile a coverage reference from the given files (normal samples).
cnvkit-reference2targets · Extract target and antitarget BED files from a CNVkit reference file.
cnvkit-scatter · Plot probe log2 coverages and segmentation calls together.
cnvkit-segment · Infer copy number segments from the given coverage table.
cnvkit-segmetrics · Compute segment-level metrics from bin-level log2 ratios.
cnvkit-sex · Guess samples' sex from the relative coverage of chromosomes X and Y.
cnvkit-target · Transform bait intervals into targets more suitable for CNVkit.
co · check out RCS revisions
co2brinepvt · compute and print pvt properties for co2 with brine
coadd · Co-add images for astrometry.net
coala · a versatile compiler from action languages to answer set programs
coala.bin · a versatile compiler from action languages to answer set programs
coalChemistryFoam · part of OpenFOAM (The Open Source CFD Toolbox).
coax · determine impedance of a coaxial structure, where the inner may be offset from the centre if necessary.
cob-config · manual page for cob-config 3.2.0
cobc · manual page for cobc 3.2.0
cobcrun · manual page for cobcrun 3.2.0
cobe · Markov chain based text generator library and chatbot
cobertura-check · show which classes do not have adequate test coverage
cobertura-instrument · add coverage instrumentation to existing classes
cobertura-merge · merge multiple data files into a single data file
cobertura-report · generate coverage reports
cobex_get · Gets a file from a device
cobex_ls · Lists the directory on remote device
cobex_put · Upload a file to a device
cobex_rm · Deletes a file on the remote device
cobfusc · make a C source file unreadable but compilable
cobol_count · count physical lines of code, in each input file
cobra · A generator for Cobra based Applications
cobra-add · Add a command to a Cobra Application
cobra-cli · A generator for Cobra-based Go Applications
cobra-cli-add · Add a command to a Cobra Application
cobra-cli-init · Initialize a Cobra Application
cobra-init · Initialize a Cobra Application
coccinella · a Jabber based IM client with integrated whiteboard
cockpit · Cockpit
cockpit-bridge · Cockpit Host Bridge
cockpit-desktop · Cockpit Desktop integration
coco
cococpp · Coco/R Compiler Generator (C++ Version)
cococs · Coco/R Compiler Generator (C-Sharp Version)
cocoj · Coco/R Compiler Generator (Java Version)
cod-tools-version · print the version of cod-tools package.
cod2rdf · describe (in RDF format) properties of COD structures.
cod_fetch · query COD server using the Perl DBD::mysql interface.
cod_manage_related · embed provided relationships between databases into a CIF file using the COD notation described in the 'cod_cif.dic' dictionary.
cod_predeposition_check · Filter and check pairs of CIF and Fobs files for suitability for deposition to COD database.
codcif2sdf · convert CIFs with crystal description (similar to those obtained from the COD) to an SDF file with a molecule description. Intended to be suitable for upload to PubChem.
code-minimap · Generate minimap of source code
code2html · Converts a program source code to HTML
code_saturne · Main user script of Code_Saturne.
codeaster · codeaster command
codeaster-client · launch the astk GUI
codeaster-get · symbolic link to as_run command
codeaster-gui · launch the astk GUI
codeaster-parallel_cp · codeaster-parallel_cp command
codeblocks · The open-source, cross-platform IDE
codebreaker · No manpage for this program, utility or function.
codecgraph · hda-intel codec graph generator
codechanges · computes the amount of code changes between two code trees or single files
codeEditor · A Python-aware code editor written using the PythonCard GUI framework
codegroup · encode / decode binary file as five letter codegroups
codeine · video player for KDE designed to be as simple as possible
codelite · a lightweight and powerful C/C++ IDE
codelite-make · a makefile generator based on CodeLite's workspace
codelite_fix_files · convert a CodeLite project and workspace from the DOS environment to the *nix environment
codelite_open_helper · Helper script to load a file from the command line.
codepage · extract a codepage from an MSDOS codepage file
codequery · create codequery database
coderay · scans a file and generates syntax-highlighted html output
coderay_stylesheet · output the default cascading stylesheet used by CodeRay.
codesearch · Debian Codesearch CLI tool
codesnippets · Stand-alone app for the codesnippets Code::Blocks plugin.
codespell · detect spelling mistakes in source code
codfis · tool to generate Italian fiscal codes
codonw · Correspondence Analysis of Codon Usage
codonw-aau · calculate Amino Acid Usage (AAU)
codonw-base3s · silent base G+C+A+T calculating program
codonw-bases · detailed report of base composition
codonw-cai · calculate Codon Adaptation Index (CAI)
codonw-cbi · calculate Codon Bias Index (CBI)
codonw-cu · calculate codon usage
codonw-cutab · tabulation of codon usage
codonw-cutot · tabulation of datasets codon usage
codonw-dinuc · dinucleotide usage of the three codon positions
codonw-enc · calculate Effective Number of Codons (ENc)
codonw-fop · calculate Frequency of OPtimal codons index (FOP)
codonw-gc · G+C content of gene (all 3 codon positions)
codonw-gc3s · GC of synonymous codons 3rd positions
codonw-raau · calculate Relative Amino Acid Usage (RAAU)
codonw-reader · output sequence in reader format
codonw-rscu · calculate Relative Synonymous Codon Usage (RSCU)
codonw-tidy · clean up sequence in FASTA format
codonw-transl · conceptual translation of DNA to amino acid
codxyz2fract · take an XYZ format [1] molecular file and convert orthogonal coordinates to fractional ones. Unit cell constants can be given as command line option parameters. [1] https://en.wikipedia.org/wiki/XYZ_file_format
codxyz2ortho · take an XYZ format [1] molecular file and convert coordinates to orthogonal ones (assuming that they were fractional in the original file). Unit cell constants can be given as command line option parameters. [1] https://en.wikipedia.org/wiki/XYZ_file_format
coffee · interpreter and compiler for the CoffeeScript language
cog · A command line tool for the conventional commits and semver specifications
cog-bump · Commit changelog from latest tag to HEAD and create new tag
cog-changelog · Display a changelog for the given commit oid range
cog-check · Verify all commit messages against the conventional commit specification
cog-commit · Create a new conventional commit
cog-edit · Interactively rename invalid commit messages
cog-generate-completions · Generate shell completions
cog-get-version · Get current version
cog-init · Install cog config files
cog-install-hook · Add git hooks to the repository
cog-log · Like git log but for conventional commits
cog-verify · Verify a single commit message
cogctl · tool to control a running Cog instance
coherence · Is a Python UPnP framework which enabling your application to participate in digital living networks, at the moment primarily the UPnP universe. Its goal is to relieve your application from all the membership and UPnP related tasks as much as possible. The core of Coherence provides a (hopefully complete) implementation of: * a SSDP server, * a MSEARCH client, * server and client for HTTP/SOAP requests, and * server and client for Event Subscription and Notification (GENA).
cohomcalg · sheaf cohomology of line bundles on toric varieties
coils-wrap · runs ncoils three times to give you a three-window output
coily · command-line management tool for Spring Python
coin-config · Display Coin Library Configuration
coinst · computes the co-installability kernel of a package repostory
coinst-upgrades · finding upgrade issues between to versions of a Debian distribution
coinst_viewer · view co-installability kernel generated by coinst for X
col · filter reverse line feeds from input
col1 · awk and print a column (based on the name of the program, 1-9)
col2 · awk and print a column (based on the name of the program, 1-9)
col3 · awk and print a column (based on the name of the program, 1-9)
col4 · awk and print a column (based on the name of the program, 1-9)
col5 · awk and print a column (based on the name of the program, 1-9)
col6 · awk and print a column (based on the name of the program, 1-9)
col7 · awk and print a column (based on the name of the program, 1-9)
col8 · awk and print a column (based on the name of the program, 1-9)
col9 · awk and print a column (based on the name of the program, 1-9)
cola · The highly caffeinated Git GUI
colcrt · filter nroff output for CRT previewing
coldEngineFoam · part of OpenFOAM (The Open Source CFD Toolbox).
coldfire · A Freescale Coldfire 5206 Emulator
colgui · realtime plotting for collectl on one or more systems (all must have collectl installed)
collapse_partials · Collection of tools to annotate genomes using long read transcriptomics data
collapseEdges · part of OpenFOAM (The Open Source CFD Toolbox).
CollapseSeq.py · emoves duplicate sequences from FASTA/FASTQ files
collateindex.pl · generate DocBook index files
collatinus · programma ad latinam morphologiam et lemmata extrahenda
collatinus-bin · programma ad latinam morphologiam et lemmata extrahenda
collatinus9 · programma ad latinam morphologiam et lemmata extrahenda
collect-reminders · collect email reminders to be sent out
collectd · System statistics collection daemon
collectd-nagios · Nagios plugin for querying collectd
collectd-tg · Traffic generator for collectd.
collectdctl · Control interface for collectd
collectdmon · Monitoring daemon for collectd
collectiongain · large scale Replay Gain calculating tool
collectl · Collects data that describes the current system status.
collectl2pcp · import collectl data to a PCP archive
collector · No manpage for this program, utility or function.
collink · Link ICC profiles.
colmap · Structure-from-Motion and Multi-View Stereo
colmux · multiplex communications to multiple systems running collectl from a single system
color-chrs.pl · Plot output of "bcftools +color-chrs"
color-ls · list contents of directories
color-picker · powerful screen color picker based on Qt.
color_correct_tiff · correct colour and brightness differences between overlapping images.
colordiff · a tool to colorize diff output
colordiff-git · a tool to colorize diff output
colorfire · Color-fire-explosion-thing-effect.
colorgcc · colorization wrapper for gcc
colorhug-backlight · Backlight utility for the ColorHug colorimeter
colorhug-ccmx · CCMX loader for the ColorHug colorimeter
colorhug-cmd · A command line utlity for the ColorHug colorimeter
colorhug-flash · A firmware updater for the ColorHug colorimeter
colorhug-refresh · Display analyzer using the ColorHug colorimeter
colorit · a script for markuping the text input
colorize · colorize text on terminal with ANSI escape sequences
colormake · color wrapper for make(1)
colormake-short · color wrapper for make(1)
colormake.pl · make output colorizer
colormap · collection of useful tools for Allegro 4 developers
colormgr · Color Manager Testing Tool
colorname · utility to associate a name to a color
colorquant_reg · image processing library
colorseg_reg · image processing library
colortail · log colorizer that makes log checking easier
colortest-16 · Display ASCII color test graph
colortest-16b · Display ASCII color test graph
colortest-256 · Display ASCII color test graph
colortest-8 · Display ASCII color test graph
colortest-python · Display color test chart and convert between color values
colplot · plots collectl data using gnuplot
colprof · Create ICC profile.
colrconv · hamradio convers client with sound and ncurses color support
colrdx · hamradio dx-cluster client with ncurses color support
colrm · remove columns from a file
column · columnate lists
columns · Columnize Input Text
colverify · Verify CIE values.
com.github.alecaddd.sequeler · SQL client built in Vala and Gtk
com.github.babluboy.bookworm · bookworm
com.github.phase1geo.minder · Mind-mapping application
com.github.tchx84.Flatseal · Manage Flatpak permissions
com.github.tkashkin.gamehub · Unified library for games from multiple sources
combine · combine sets of lines from two files using boolean operations
combine-dmk · Tools for handling DMK disk image files
combine-uid-lists · merge numerical lists
combine_lang_model · generate starter traineddata
combine_tessdata · combine/extract/overwrite/list/compact Tesseract data
combine_tradis_plots · bio-tradis: combine multiple plotfiles and generate updated statistics
combined2dlf · convert combined log file to DLF
combinediff · create a cumulative unified patch from two incremental patches
combineKmers · basic algorithm to combine kmer counts across samples This program belongs to seer(1) (Sequence Element (kmer) Enrichment Analysis).
combineMUMs · package for sequence alignment of multiple genomes
combinePatchFaces · part of OpenFOAM (The Open Source CFD Toolbox).
combinesummaries · Scalar Summary Combination Tool
combostatus · Xymon combination test tool
combust
comdraw · drawtool with distributed command interpreter
comedi_board_info · reports useful information about COMEDI devices
comet-ms · The comet-ms package ships the comet-ms binary that does MS/MS database searches.
CometAdapter · library for LC/MS data management and analysis - tools
comgt · Option GlobeTrotter GPRS/EDGE/3G/HSDPA and Vodafone 3G/GPRS datacard control tool
comicthumb · Thumbnailer for cbz, cbr and cbt archives.
comigrate · managing package migrations from Debian unstable to testing
comitup-cli · command-line interface for comitup network management
comitup-web · Wifi configuration web server for the Comitup service
comix · Comic Book Viewer
comm · compare two sorted files line by line
command · index of FreeBSD shell built-in commands
command.reg · simple GroupKit command line registration interface
commander · COMMANDER
commandtoescpx · enhanced esc/p raster driver for cups
commandtopclx · enhanced pcl raster driver for cups
commit-id · get the sha1 id of an object associated with the given symbolic id
commit-partial · commit patches to Darcs, Git, Mercurial, Bazaar, Monotone, Subversion, or CVS repositories
commit-patch · commit patches to Darcs, Git, Mercurial, Bazaar, Monotone, Subversion, or CVS repositories
commit_agent · Generic CTN manual page
common2dlf · convert Common Log Format web server log files to www DLF
commoncpp-config · script to get information about common c++ library
commonize · JavaScript transpiler to Node-compatible CommonJS
commonmark · parse Markdown
comp · compose a message
comp_err · compile MySQL error message file
comp_to_v5d · No manpage for this program, utility or function.
compactsga · reads a ChIP-seq data file and merges equal tag positions into a single line
compalign · compare two multiple alignments
compamb · compute good ambient value for a rad input file
compare · mathematically and visually annotate the difference between an image and its reconstruction.
compare-file-pools · lists OIDs with different values in two file pools
compare-histos · generate comparison histograms
compare-im6 · mathematically and visually annotate the difference between an image and its reconstruction.
compare-im6.q16 · mathematically and visually annotate the difference between an image and its reconstruction.
compare-im6.q16hdri · mathematically and visually annotate the difference between an image and its reconstruction.
compare-im7.q16 · mathematically and visually annotate the difference between an image and its reconstruction.
compare-im7.q16hdri · mathematically and visually annotate the difference between an image and its reconstruction.
compare.im6 · mathematically and visually annotate the difference between an image and its reconstruction.
compare_genomes · find methylation in nanopore reads
compare_octrees · Compare two octrees for accuracy / compression
compare_scheds · compare schedule files generated by schedule
compareECL · Comparator for Eclipse files
comparepdf · compare two PDF files textually or visually
comparePolishes · utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishes
compareTwoCompositeTransforms · part of ANTS registration suite
compareTwoTransforms · part of ANTS registration suite
comparoob · compare products
compartment · secure program/service wrapper
compass · Stylesheet Framework streamlining creation and maintenance of CSS
compel
compface · compress and expand 48x48x1 face image files
compile · a set of tools to compile and manage programs written in Eiffel
compile-modules · Transpile ECMAScript 6 modules to ECMAScript 5
compile_encoding · compile XML encmap into a binary encoded file for XML::Parser
compile_et · error table compiler
compile_to_c · a set of tools to compile and manage programs written in Eiffel
compile_to_jvm · a set of tools to compile and manage programs written in Eiffel
compiler · TTCN-3 and ASN.1 to C++ translator
compilercache · a caching wrapper around compilers to speed up compilations
compileserver-3.2.2 · Helper tool for Free Pascal Compiler (FPC)
compileSpliceCands · Find introns parsing a set of exon candidates in GFF format
compiz · OpenGL window and compositing manager
compiz-boxmenu · control Compiz Boxmenu
compiz-boxmenu-daemon · the daemon that holds Compiz Boxmenu's menus
compiz-boxmenu-dlist · tell compiz-boxmenu-daemon to display just a document list
compiz-boxmenu-dplist · tell compiz-boxmenu-daemon to display just a desktop list
compiz-boxmenu-editor · edit compiz-boxmenu-daemon's menus.
compiz-boxmenu-vplist · tell compiz-boxmenu-daemon to display just a viewport list
compiz-boxmenu-wlist · tell compiz-boxmenu-daemon to display just a window list
compiz.real · OpenGL window and compositing manager
complearn-config · script to get information about the installed version of CompLearn
complete · index of FreeBSD shell built-in commands
complex · undocumented LADR4 applications
complexity · Measure complexity of C source
complogin · Cisco login script
CompNovo · library for LC/MS data management and analysis - tools
CompNovoCID · library for LC/MS data management and analysis - tools
compose · execute programs via entries in the mailcap file
composefs-info · print information about a composefs image
composeglyphs · generate an encoding vector or new font for postscript
ComposeMultiTransform · part of ANTS registration suite
composer · Composer command line interface
composite · overlaps one image over another.
composite-im6 · overlaps one image over another.
composite-im6.q16 · overlaps one image over another.
composite-im6.q16hdri · overlaps one image over another.
composite-im7.q16 · overlaps one image over another.
composite-im7.q16hdri · overlaps one image over another.
composite.im6 · overlaps one image over another.
composite_rsr_plot · plot spectral responses for a set of satellite imagers
composite_sampler · audio sampler/synth plugin (LV2)
CompositeTransformUtil · part of ANTS registration suite
compress · compress and expand data
compress-dummy · replacement script for uncompressing legacy shar files
compressibleInterDyMFoam · part of OpenFOAM (The Open Source CFD Toolbox).
compressibleInterFilmFoam · part of OpenFOAM (The Open Source CFD Toolbox).
compressibleInterFoam · part of OpenFOAM (The Open Source CFD Toolbox).
compressibleMultiphaseInterFoam · part of OpenFOAM (The Open Source CFD Toolbox).
comprez · safely (un)tar and (de)feather files and directories
comps2solv · convert rpm-md comps.xml file into a solv file
compstruct
comptext · GUI-based tool to compare two text streams
compton · a compositor for X11
compton-trans · an opacity setter tool
comptty · GUI-based tool to compare two RTTY text streams
compute_all · count source lines of code (SLOC)
compute_sloc_lang · count source lines of code (SLOC)
computeMedians · medians calculator for clonalorigin xml files
computeSensitivities · part of OpenFOAM (The Open Source CFD Toolbox).
comskip · commercial detector
comskip-gui · commercial detector
comterp · distributed command interpreter demonstrator
con2fbmap · shows and sets mapping between consoles and framebuffer devices.
concalc · console calculator
concavity · predictor of protein ligand binding sites from structure and conservation
conch · Conch SSH client
conch2.2 · connect to SSH servers
conch2.3 · connect to SSH servers
conchftp · Conch command-line SFTP client
concordance · for programming your Logitech Harmony remote control
condom · protection against viruses and prevention of child processes
condor_adstash · HTCondor Manual Gather schedd and/or startd job history ClassAds and push them via a search engine or file interface.
condor_advertise · HTCondor Manual Send a ClassAd to the condor_collector daemon
condor_annex · HTCondor Manual Add cloud resources to the pool.
condor_check_password · HTCondor Manual Examine HTCondor key files, looking for keys that prior version of HTCondor will not fully read.
condor_check_userlogs · HTCondor Manual Check job event log files for errors
condor_checkpoint · a checkpoint command to jobs running on specified hosts
condor_chirp · HTCondor Manual Access files or job ClassAd from an executing job
condor_cod · COD machines and jobs
condor_cold_start · and start Condor on this machine
condor_cold_stop · shut down and uninstall a running Condor instance
condor_compile · a relinked executable for use as a standard universe job
condor_config_bind · together a set of configuration files
condor_config_val · HTCondor Manual Query or set a given HTCondor configuration variable
condor_configure · HTCondor Manual Configure or install HTCondor
condor_continue · HTCondor Manual continue suspended jobs from the HTCondor queue
condor_convert_history · the history file to the new format
condor_dagman · HTCondor Manual meta scheduler of the jobs submitted as the nodes of a DAG or DAGs
condor_dagman_metrics_repor · the statistics of a DAGMan run to a central HTTP server
condor_drain · HTCondor Manual Control draining of an execute machine
condor_evicted_files · HTCondor Manual Inspect the file(s) that HTCondor is holding on to as a result of a job being evicted when when_to_transfer_output = ON_EXIT_OR_EVICT, or checkpointing when CheckpointExitCode is set.
condor_fetchlog · HTCondor Manual Retrieve a daemon's log file that is located on another computer
condor_findhost · HTCondor Manual find machine(s) in the pool that can be used with minimal impact on currently running HTCondor jobs and best meet any specified constraints
condor_gather_info · HTCondor Manual Gather information about an HTCondor installation and a queued job
condor_glidein · a remote grid resource to a local Condor pool
condor_gpu_discovery · HTCondor Manual Output GPU-related ClassAd attributes
condor_history · HTCondor Manual View log of HTCondor jobs completed to date
condor_hold · HTCondor Manual put jobs in the queue into the hold state
condor_install · HTCondor Manual Configure or install HTCondor
condor_job_router_info · HTCondor Manual Discover and display information related to job routing
condor_master · HTCondor Manual The master HTCondor Daemon
condor_now · HTCondor Manual Start a job now.
condor_off · HTCondor Manual Shutdown HTCondor daemons
condor_on · HTCondor Manual Start up HTCondor daemons
condor_ping · HTCondor Manual Attempt a security negotiation to determine if it succeeds
condor_pool_job_report · HTCondor Manual generate report about all jobs that have run in the last 24 hours on all execute hosts
condor_power · HTCondor Manual send packet intended to wake a machine from a low power state
condor_preen · HTCondor Manual remove extraneous files from HTCondor directories
condor_prio · HTCondor Manual change priority of jobs in the HTCondor queue
condor_procd · HTCondor Manual Track and manage process families
condor_q · HTCondor Manual Display information about jobs in queue
condor_qedit · HTCondor Manual modify job attributes
condor_qsub · HTCondor Manual Queue jobs that use PBS/SGE-style submission
condor_reconfig · HTCondor Manual Reconfigure HTCondor daemons
condor_release · HTCondor Manual release held jobs in the HTCondor queue
condor_remote_cluster · HTCondor Manual Manage and configure the clusters to be accessed.
condor_reschedule · HTCondor Manual Update scheduling information to the central manager
condor_restart · HTCondor Manual Restart a set of HTCondor daemons
condor_rm · HTCondor Manual remove jobs from the HTCondor queue
condor_rmdir · HTCondor Manual Windows-only no-fail deletion of directories
condor_router_history · HTCondor Manual Display the history for routed jobs
condor_router_q · HTCondor Manual Display information about routed jobs in the queue
condor_router_rm · HTCondor Manual Remove jobs being managed by the HTCondor Job Router
condor_run · HTCondor Manual Submit a shell command-line as an HTCondor job
condor_set_shutdown · HTCondor Manual Set a program to execute upon condor_master shut down
condor_sos · HTCondor Manual Issue a command that will be serviced with a higher priority
condor_ssh_start · HTCondor Manual
condor_ssh_to_job · HTCondor Manual create an ssh session to a running job
condor_ssl_fingerprint · HTCondor Manual list the fingerprint of X.509 certificates for use with SSL authentication
condor_stats · HTCondor Manual Display historical information about the HTCondor pool
condor_status · HTCondor Manual Display status of the HTCondor pool