cmtk-stream_pixels1
Stream pixel data from one or more images to standard output.
Usage
stream_pixels ImagePaths
Overview
This tool reads one or more images and writes all their pixels to standard output in binary form. Optionally, each image can be reoriented to a specified anatomical orientation and/or converted to a different data type. This is useful for piping image data through a pipeline, e.g., the Camino DTI toolkit.
Options
Global Toolkit Options (these are shared by all CMTK tools)
-
--help -
Write list of basic command line options to standard output.
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--help-all -
Write complete list of basic and advanced command line options to standard output.
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--wiki -
Write list of command line options to standard output in MediaWiki markup.
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--man -
Write man page source in 'nroff' markup to standard output.
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--version -
Write toolkit version to standard output.
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--echo -
Write the current command line to standard output.
-
--verbose-level <integer> -
Set verbosity level.
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--verbose, -v -
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
-
--threads <integer> -
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options
-
--reorient <string> -
Reorient all images to anatomy-based standard orientation, e.g., RAS or LPS for axial. Default: no reorientation. [Default: NONE]
-
--change-endian -
Change endianness. Default: native endianness.
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--convert -
Convert data to new scalar type. Default: no conversion. Supported values: "char", "byte", "short", "ushort", "int", "uint", "float", "double", or use one of the following:
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--char -
8 bits, signed integer
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--byte -
8 bits, unsigned integer
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--short -
16 bits, signed integer
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--ushort -
16 bits, unsigned integer
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--int -
32 bits, signed integer
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--uint -
32 bits, unsigned integer
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--float -
32-bits, single-precision floating point
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--double -
64 bits, double-precision floating point
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Acknowledgments
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
History
- Debian 13 (Trixie): the text shown here
- Debian 12 (Bookworm)
- Debian 11 (Bullseye)
- Debian 10 (Buster)
- Debian 9 (Stretch)
- Debian 8 (Jessie)