cmtk-mk_phantom_3d1
Generate phantom image
Usage
mk_phantom_3d [options]
command0
[command1 ...]
sphere x,y,z
radius
value
box x0,y0,z0
x1,y1,z1
value
Overview
Generate 3D digital phantom images using a selection of drawing commands
Options
Global Toolkit Options (these are shared by all CMTK tools)
-
--help -
Write list of basic command line options to standard output.
-
--help-all -
Write complete list of basic and advanced command line options to standard output.
-
--wiki -
Write list of command line options to standard output in MediaWiki markup.
-
--man -
Write man page source in 'nroff' markup to standard output.
-
--version -
Write toolkit version to standard output.
-
--echo -
Write the current command line to standard output.
-
--verbose-level <integer> -
Set verbosity level.
-
--verbose, -v -
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
-
--threads <integer> -
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options
-
--dims <string>, -D <string> -
Set dimensions in voxels
-
--voxel <string>, -V <string> -
Set voxel size in [mm]
-
--coordinates -
Coordinate specification mode. Supported values: "indexed", "absolute", "relative", where the default is "indexed", or use one of the following:
-
--indexed -
Use grid indexes to specify coordinates. For each dimension, the valid value range is [0,Dims-1]. [This is the default]
-
--absolute -
Use absolute volume coordinates. For each dimension, the valid range is [0,FOV].
-
--relative -
Use relative volume coordinates. For each dimension, the valid range is [0,1].
-
-
--char, -c -
8 bits, signed
-
--byte, -b -
8 bits, unsigned
-
--short, -s -
16 bits, signed
-
--ushort, -u -
16 bits, unsigned [This is the default]
-
--int, -i -
32 bits signed
-
--float, -f -
32 bits floating point
-
--double, -d -
64 bits floating point
-
--bg <double>, -B <double> -
Set the image background value (use to initialize newly created image). [Default: 0]
-
--import <string>, -I <string> -
Import image [Default: NONE]
-
--import-grid <string> -
Import image grid only, ignore data [Default: disabled]
-
--outfile <string>, -o <string> -
File name for output image [Default: phantom.nii ]
Acknowledgments
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
History
- Debian 13 (Trixie): the text shown here
- Debian 12 (Bookworm)
- Debian 11 (Bullseye)
- Debian 10 (Buster)
- Debian 9 (Stretch)
- Debian 8 (Jessie)
- Debian 7 (Wheezy)