cnvkit-bintest1
Test for single-bin copy number alterations.
Overview
usage: cnvkit.py bintest [-h] [-s FILENAME] [-a ALPHA] [-t] [-o OUTPUT]
-
cnarray
positional arguments:
- cnarray
-
Bin-level log2 ratios (.cnr file), as produced by 'fix'.
options:
-
-h, --help -
show this help message and exit
-
-s FILENAME, --segment FILENAME -
Segmentation calls (.cns), the output of the 'segment' command).
-
-a ALPHA, --alpha ALPHA -
Significance threhold. [Default: 0.005]
-
-t, --target -
Test target bins only; ignore off-target bins.
-
-o OUTPUT, --output OUTPUT -
Output filename.
History
- Debian 13 (Trixie): the text shown here
- Debian 12 (Bookworm)
- Debian 11 (Bullseye)