compare_genomes1
Find methylation in nanopore reads
Overview
usage: compare_genomes.py [-h] --bed1 BED1 --bed2 BED2 [-g GENOME_ALIGNMENT]
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[-v]
Compare methylation between two genomes by probabilities of methylation for aligned positions
optional arguments:
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-h, --help -
show this help message and exit
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--bed1 BED1 -
bed file 1 with verbose output from make_bed.py
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--bed2 BED2 -
bed file 2 with verbose output from make_bed.py
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-g GENOME_ALIGNMENT, --genome_alignment GENOME_ALIGNMENT -
an xmfa file from mauve (if absent, alignments assumed to be to the same reference genome)
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-v, --version -
print version