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cmtk-xform2itk(1)

cmtk-xform2itk1

Convert affine transformations to itk format.

Usage

xform2itk InputPath OutputPath

Overview

This tool converts coordinate transformations from CMTK format to ITK format and, in the process, also correct for differences in image coordinate conventions

Options

Global Toolkit Options (these are shared by all CMTK tools)

--help

Write list of basic command line options to standard output.

--help-all

Write complete list of basic and advanced command line options to standard output.

--wiki

Write list of command line options to standard output in MediaWiki markup.

--man

Write man page source in 'nroff' markup to standard output.

--version

Write toolkit version to standard output.

--echo

Write the current command line to standard output.

--verbose-level <integer>

Set verbosity level.

--verbose, -v

Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>

Set maximum number of parallel threads (for POSIX threads and OpenMP).

Input parameters

--fixed-space <string>

Change fixed image coordinate space (e.g., 'RAS', 'LPS', ...). This defaults to ITK standard space. [Default: LPS ]

--moving-space <string>

Change moving image coordinate space (e.g., 'RAS', 'LPS', ...). This defaults to ITK standard space. [Default: LPS ]

--invert-input

Invert input transformation before conversion

Output parameters

--fixed-image <string>

Override transformation's fixed/reference image (if any) with this one. [Default: NONE]

--moving-image <string>

Override transformation's moving/floating image (if any) with this one. [Default: NONE]

Acknowledgments

CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.

History

  • Debian 13 (Trixie): the text shown here
  • Debian 12 (Bookworm)
  • Debian 11 (Bullseye)
  • Debian 10 (Buster)
  • Debian 9 (Stretch)
  • Debian 8 (Jessie)
  • Debian 7 (Wheezy)

Authors

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

License

http://www.fsf.org/licensing/licenses/gpl.html

Bugs

Report bugs at http://nitrc.org/projects/cmtk/

From cmtk 3.3.1p2+dfsg-3 in Debian 13 (Trixie). Parsed by carta from the page's man source.