Section 1

• fbye · terminates session with FSP database
• fbzx · ZX Spectrum emulator for X / framebuffer
• fc · frontend script to the f2c fortran compiler
• fc-cache · build font information cache files
• fc-cat · read font information cache files
• fc-conflist · list the configuration files processed by Fontconfig
• fc-genconf · generate a configuration in XML format
• fc-list · list available fonts
• fc-match · match available fonts
• fc-pattern · parse and show pattern
• fc-query · query font files
• fc-scan · scan font files or directories
• fc-validate · validate font files
• fc_run · run genome assembly using FALCON
• fc_run.py · run genome assembly using FALCON
• fcal · Calculates a best-fit straight line for calibration data
• fcasplit · tool to split source code into separate per-routine files
• fcat · Output the contents of a file based on its name.
• fcatcmd · copy files in the FSP database to stdout
• fccexam
• fcd · change client's current working directory in the FSP database
• fcd_nfm_rx · Narrow band FM receiver example
• fcdcmd · change client's current working directory in the FSP database
• fce_listen · AFP protocol tests
• fcheck
• fcitx · Free Chinese Input Toy of X - a Chinese IME for XIM
• fcitx-imlist · Command-line utility to switch list of Fcitx IM
• fcitx-remote · Tool for control fcitx state via console
• fclient · interact with a Freenet node
• FCluster · remove noise from high throughput nucleotide sequence data
• FClusterM · remove noise from high throughput nucleotide sequence data
• fcm · FCM, tools for managing and building source code.
• fcml-asm · single-line assembler
• fcml-disasm · single-line disassembler
• fcombautogen · image processing library
• fcomp · file compare
• fconvolver · is a Convolution Engine for JACK using FFT-based partitioned convolution with multiple partition sizes.
• fcp · No manpage for this program, utility or function.
• fcrackzip · a Free/Fast Zip Password Cracker
• fcrackzipinfo · display zip information
• fcron-update-crontabs · refreshes all fcron crontabs
• fcrondyn · dialog dyn-amically with a running fcron daemon
• fcrontab · manipulate per-user fcrontab files which adhere to the format defined in fcrontab(5)
• fctl · Control a LAM remote file daemon.
• fd · find entries in the filesystem
• fd0ssh · pipe for password-over-stdin support to ssh
• fd2c · Prolog compiler, includes CLP(FD).
• fd2pascal · Free Pascal forms description to pascal program converter
• fd2pascal-2.6.0 · Free Pascal forms description to pascal program converter
• fd2pascal-2.6.4 · Free Pascal forms description to pascal program converter
• fd2pascal-3.0.0 · Free Pascal forms description to pascal program converter
• fd2pascal-3.0.4 · Free Pascal forms description to pascal program converter
• fd2pascal-3.2.0 · Free Pascal forms description to pascal program converter
• fd2pascal-3.2.2 · Free Pascal forms description to pascal program converter
• fd2ps · Translates fdesign output to PostScript
• fd_add · adds a value to a frame
• fd_drop · removes a value to a frame
• fd_find · finds frames with a particular slot value
• fd_get · gets the values of a slot on a frame
• fd_id · prints frames along with their names
• fd_make · creates a new frame with particular slot values
• fd_test · tests whether a slot of a frame has a particular value
• fda-landscape · Command line interface to fda-landscape in mlpy (version 2.2.0)
• fdatest · No manpage for this program, utility or function.
• fdcgi · execute a CGI script implemented in FDScript
• fdconfig · manipulates FramerD configuration files
• fdd · describes a frame to the standard output
• fdesign · Forms Library User Interface Designer
• fdf2fit · Script to convert Origin-4 .fdf fit parameter files to Grace format
• fdf2tan · ConTeXt and PDF auxiliary program and batch processor
• fdf2tex · Convert PDF formular data (FDF) into something (Con)TeX(t) can handle
• fdfind · find entries in the filesystem
• fdflush · force floppy disk drive to detect disk change
• fdformat · Low-level formats a floppy disk
• fdk · cone-beam reconstruction from projections using the FDK algorithm The term FDK refers to the authors Feldkamp, Davis, and Kress who wrote the seminal paper "Practical cone-beam algorithm" in 1984. Their paper describes a filtered back-projection reconstruction algorithm for cone-beam geometries. The fdk program in plastimatch is an implmenetation of the FDK algorithm.
• fdkaac · command line frontend for libfdk-aac encoder
• fdlist · Floppy disk mount utility
• fdm · fetch and deliver mail
• fdmdv_demod · a diagnostic tool for the codec2 library to create a codec2 bit file from a series of FDMDV modem samples.
• fdmdv_get_test_bits · a diagnostic tool for the codec2 library to generate data for fdmdv_mod.
• fdmdv_mod · a diagnostic tool for the codec2 library to create a raw modem signal file from a codec2 bit file.
• fdmdv_put_test_bits · a diagnostic tool for the codec2 library to test fdmdv_mod.
• fdmount · Floppy disk mount utility
• fdmountd · Floppy disk mount utility
• fdnscname · resolve the canonical name of a host
• fdnsip · resolve a hostname to an IPv4 address
• fdnsip6 · resolve a hostname to an IPv6 address
• fdnsip6list · resolve a hostname to a list of IPv6 addresses
• fdnsiplist · resolve a hostname to a list of IPv4 addresses
• fdnsmx · resolve an MX record of a hostname
• fdnsmxalist · resolve a list of MX records and their corresponding A records for hostname
• fdnsmxlist · resolve a list of MX records for hostname
• fdnsname · resolve an IPv4 or IPv6 address to a hostname
• fdnsnamep · resolve an IPv4 or IPv6 address to a hostname with paranoid checking
• fdnsspf1 · resolve an SPF version 1 record of a hostname
• fdnstxt · resolve a TXT record of a hostname
• fdnstxtlist · resolve a list of TXT records for a hostname
• fdp · filter for drawing directed graphs neato - filter for drawing undirected graphs twopi - filter for radial layouts of graphs circo - filter for circular layout of graphs fdp - filter for drawing undirected graphs sfdp - filter for drawing large undirected graphs patchwork - filter for squarified tree maps osage - filter for array-based layouts
• fdpowermon · add a battery level icon to a freedesktop.org-compliant system tray
• fdrawcmd · send raw commands to the floppy disk controller
• fdread · read floppy disks
• fdscript · start an FDscript interpreter
• fdserver · start a FramerD server
• fdservlet · execute a persistent FramerD "servlet" to handle CGI requests
• fdsh · simple shell for fdclone
• fdtdump · prints a readable version of a flat device-tree file.
• fdtget · read values from device-tree
• fdtput · write a property value to a device-tree
• fdu · display the number of disk blocks used per directory or file
• fducmd · display the number of disk blocks used per directory or file
• fdumount · Floppy disk mount utility
• fdupdate · installs FramerD files
• fdupes · finds duplicate files in a given set of directories
• fdwrite · format and write floppy disks
• fdxml · convert an FDXML document to XHTML
• fdxs · manipulates FramerD configuration files
• featreplace · read a ChIP-seq data file and changes the name of the feature field
• feature-check · query a program for supported features
• featureCounts · toolkit for processing next-gen sequencing data
• FeatureFinderCentroided · library for LC/MS data management and analysis - tools
• FeatureFinderIdentification · library for LC/MS data management and analysis - tools
• FeatureFinderIsotopeWavelet · library for LC/MS data management and analysis - tools
• FeatureFinderMetabo · library for LC/MS data management and analysis - tools
• FeatureFinderMetaboIdent · library for LC/MS data management and analysis - tools
• FeatureFinderMRM · library for LC/MS data management and analysis - tools
• FeatureFinderMultiplex · library for LC/MS data management and analysis - tools
• FeatureFinderRaw · library for LC/MS data management and analysis - tools
• FeatureFinderSuperHirn · library for LC/MS data management and analysis - tools
• FeatureLinkerLabeled · library for LC/MS data management and analysis - tools
• FeatureLinkerUnlabeled · library for LC/MS data management and analysis - tools
• FeatureLinkerUnlabeledKD · library for LC/MS data management and analysis - tools
• FeatureLinkerUnlabeledQT · library for LC/MS data management and analysis - tools
• features-matching · Demonstration of image feature matching
• fedmsg-announce · send an announcement to the fedmsg bus
• fedmsg-collectd · collectd plugin for monitoring the fedmsg bus
• fedmsg-config · query or print the parsed fedmsg configuration
• fedmsg-dg-replay · replay a message from the datagrepper history on your local bus
• fedmsg-gateway · rebroadcast messages to a special fedmsg bus endpoint
• fedmsg-hub · all-purpose fedmsg consuming daemon
• fedmsg-irc · relay messages from the fedmsg bus to any number of IRC channels
• fedmsg-logger · simply emit messages from the command-line to the fedmsg bus
• fedmsg-relay · relay connections from active loggers to the fedmsg bus
• fedmsg-tail · listen to the fedmsg bus and print the received messages
• fedmsg-trigger · run a command when messages arrive on the fedmsg bug
• feed2exec · The programmable feed reader
• feed2exec-plugins · feed2exec plugin documentation This is a quick overview of the available plugins.
• feed2imap · clever RSS/ATOM feed aggregator
• feed2imap-cleaner · Removes old items from IMAP folders
• feed2imap-dumpconfig · Dump feed2imap config
• feed2imap-opmlimport · Convert an OPML subscription list to a feed2imap config file
• feed2toot · Take rss feed and send it to Mastodon
• feedback · Stirring colors with a jiggling warp.
• feedbackd · A daemon to provide feedback on events
• feedGnuplot · General purpose pipe-oriented plotting tool
• feedgnuplot · General purpose pipe-oriented plotting tool
• feedreader · modern rss reader application
• feedvalidator · a tool for validating syndication feeds
• feff6 · High-order multiple-scattering EXAFS/XANES code
• feff8l · Feff85L monolithic main program
• feff_plot_cross_section · pymatgen
• feff_plot_dos · pymatgen
• feffit · program for analysis of XAFS data
• feh · image viewer and cataloguer
• feh-cam · a utility for viewing live webcam images gen_cam_menu.sh - a utility for updating Enlightenment user menus for feh-cam.
• fel
• felix · A browser for a Latin-French dictionary
• felix-framework · command line Felix OSGi Framework launcher
• felt · command line based Finite ELemenT engine
• femon · a program to monitor DVB frontend signal input.
• fenics-version · display the DOLFIN version number
• fenicsformcompilerx · FEniCS Form Compiler X Documentation The is an experimental version of the FEniCS Form Compiler. It is developed at https://github.com/FEniCS/ffcx.
• fenix · development environment for making 2D games
• fenix-fpg · create packages of multiple images for fenix
• fenix-fxc · fenix compiler
• fenix-fxi · fenix interpreter
• fenix-map · convert images to fenix native format (map)
• fennel · a lisp programming language that runs on Lua
• fenrir
• ferite · No manpage for this program, utility or function.
• ferite-config · No manpage for this program, utility or function.
• ferm · a firewall rule parser for linux
• ferret · CASE tool for edit data models
• ferret-browser · lets you browse Ferret indexes
• festalon · a player for NSF (NES Sound File) music files
• festival · a text-to-speech system.
• festival_client · client access to festiva; text-to-speech server mode
• fet · free timetabling
• fet-cl · free timetabling - command line
• feta · a frontend to many Debian package-related tools
• fetch · retrieve a file by Uniform Resource Locator
• fetch-ebook-metadata · fetch-ebook-metadata Fetch book metadata from online sources. You must specify at least one of title, authors or ISBN. Whenever you pass arguments to fetch-ebook-metadata that have spaces in them, enclose the arguments in quotation marks. For example: "/some path/with spaces"
• fetch-eclipse-source · checks out an eclipse project from CVS.
• fetch-pmc · fetch records from a local NCBI PubMed Central archive by UID
• fetch-pubmed · fetch records from a local NCBI PubMed archive by UID
• fetch_all_refseq_bacterial_genomes · visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
• fetch_all_refseq_chloroplast_genomes · visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
• fetch_all_refseq_mitochondrial_genomes · visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
• fetch_cif_dict · fetch cif_core.dic from the IUCr FTP site if non-expired local copy does not exist.
• fetch_genome_by_accession · visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
• fetch_refseq_bacterial_genomes_by_name · visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
• fetch_tles · Script to download and store satellite TLE data
• fetchappindex · Freshmeat ncurses-based offline browser fetchappindex - fetch Freshmeat appindex.txt fetchlsm - fetch Linux Software Map
• fetchexc · program to retrieve email from Microsoft Exchange servers via WebDAV
• fetchfile · fetch file(s) via O-SAFT protocol
• fetchlsm · Freshmeat ncurses-based offline browser fetchappindex - fetch Freshmeat appindex.txt fetchlsm - fetch Linux Software Map
• fetchmail · fetch mail from a POP, IMAP, ETRN, or ODMR-capable server
• fetchmailconf · fetch mail from a POP, IMAP, ETRN, or ODMR-capable server
• fetchmailrc · fetch mail from a POP, IMAP, ETRN, or ODMR-capable server
• fetchyahoo · retrieve mail from Yahoo!'s webmail service
• fetchzone · get dns zone from server
• fever · fast, extensible and flexible event router
• fever-alertify · convert metadata events into alerts
• fever-bloom · modify Bloom filter used by FEVER for detection
• fever-bloom-add · add items to Bloom filter
• fever-bloom-reload · reload Bloom filter from disk
• fever-bloom-save · save Bloom filter to disk
• fever-bloom-show · print information on Bloom filter
• fever-completion · Generate the autocompletion script for the specified shell
• fever-completion-bash · Generate the autocompletion script for bash
• fever-completion-fish · Generate the autocompletion script for fish
• fever-completion-powershell · Generate the autocompletion script for powershell
• fever-completion-zsh · Generate the autocompletion script for zsh
• fever-help · Help about any command
• fever-makeman · Create man pages
• fever-run · start FEVER service
• fever-version · Show FEVER version
• fex2bin · convert between .fex files and the binary representation
• fexget · F*EX client
• fexsend · F*EX client
• feynmf · Process LaTeX files using FeynMF
• ff-c++ · tool for automatic compilation with FreeFem++ library
• ff-get-dep · tool to retrieve dependence for compilation with FreeFem++ library
• ff-mpirun · a tool for running jobs in parallel within FreeFem++
• ff-pkg-download · tool to download package for building FreeFem++ loadable modules
• ff2jpg · convert farbfeld to JPG
• ff2pam · convert farbfeld to PAM
• ff2png · convert farbfeld to PNG
• ff2ppm · convert farbfeld to PPM
• ff3d · FreeFEM3D is a general PDE solver
• ffado-bridgeco-downloader · firmware download application for BridgeCo devices
• ffado-dbus-server · expose the mixer features of connected FFADO devices through DBus
• ffado-debug · Run FFADO in debug mode
• ffado-diag · print system diagnostic information related to FFADO.
• ffado-dice-firmware · firmware download application for DICE-based devices
• ffado-fireworks-downloader · firmware download application for Echo Fireworks devices
• ffado-mixer · a graphical front-end for the FFADO mixer DBus controls exposed by ffado-dbus-server.
• ffado-test · Free FireWire Audio Drivers
• ffado-test-isorecv · Free FireWire Audio Drivers
• ffado-test-isoxmit · Free FireWire Audio Drivers
• ffado-test-streaming · Free FireWire Audio Drivers
• ffado-tools · Free FireWire Audio Drivers
• ffbamg · a two - dimensional anisotropic mesh generator and interpolator
• ffc · the FEniCS Form Compiler
• ffc-2 · the FEniCS Form Compiler
• ffc-3 · the FEniCS Form Compiler
• ffc-clean · clean up the FFC JIT cache
• ffcfstress · constant force stress test for force-feedback devices
• ffcvt · ffmpeg convert wrapper tool
• ffcx · FEniCS Form Compiler X Documentation The is an experimental version of the FEniCS Form Compiler. It is developed at https://github.com/FEniCS/ffcx.
• ffcx-3 · FEniCS Form Compiler X Documentation The is an experimental version of the FEniCS Form Compiler. It is developed at https://github.com/FEniCS/ffcx.
• ffDiaporama · Movie creator
• ffe · flat file extractor
• FFEval · library for LC/MS data management and analysis - tools
• ffglut · a visualisation tool, based on the GLUT library, used for viewing meshes and results within FreeFem++
• ffihugs · Hugs 98, functional programming system
• ffind · Finds the name of the file or directory using a given inode
• ffindcmd · find files by name or by other characteristics in FSP database
• ffindex_apply · apply a program to each FFindex entry
• ffindex_apply_mpi · apply a program to each FFindex entry (mpi enhanced)
• ffindex_build · build file index from files in directories
• ffindex_from_fasta · populate index from FASTA file
• ffindex_from_tsv · populate index from TSV file
• ffindex_get · retrieve entries from file index
• ffindex_modify · modify file index entries
• ffindex_unpack · unpack file index entries
• fflas-ffpack-config · configuration tool for FFLAS-FFPACK
• fflow · generate a flowgraph for fortran files.
• ffmaster · Example of coupling c program and freemfem++ script with mmap and semaphore
• ffmedit · a tool that runs Medit adapted to FreeFem++
• ffmpeg · ffmpeg media converter
• ffmpeg-all · ffmpeg media converter
• ffmpeg-bitstream-filters · FFmpeg bitstream filters
• ffmpeg-codecs · FFmpeg codecs
• ffmpeg-config · script to get information about the installed version of ffmpeg
• ffmpeg-devices · FFmpeg devices
• ffmpeg-filters · FFmpeg filters
• ffmpeg-formats · FFmpeg formats
• ffmpeg-protocols · FFmpeg protocols
• ffmpeg-resampler · FFmpeg Resampler
• ffmpeg-scaler · FFmpeg video scaling and pixel format converter
• ffmpeg-utils · FFmpeg utilities
• ffmpeg2theora · command-line converter to create Ogg Theora and Ogg Vorbis files.
• ffmpeg_harvid · ffmpeg media converter
• ffmpegfs · mounts and transcodes a multitude of formats to one of the target formats on the fly.
• ffmpegthumbnailer · fast and lightweight video thumbnailer
• ffmsindex · FFmpegSource2 indexing app
• ffmvforce · force orientation test for force-feedback devices
• ffplay · FFplay media player
• ffplay-all · FFplay media player
• ffprobe · ffprobe media prober
• ffprobe-all · ffprobe media prober
• ffprobe_harvid · ffprobe media prober
• ffscan · checks argument count for fortran f77 files
• ffserver · ffserver video server
• ffserver-all · ffserver video server
• ffset · set force-feedback device parameters
• fft-float · Fast Fourier Transformation
• fftest · tests force-feedback devices.
• fftns
• fftnsi
• fftw-wisdom · create wisdom (pre-optimized FFTs)
• fftw-wisdom-to-conf · generate FFTW wisdom (pre-planned transforms)
• fftwf-wisdom · create wisdom (pre-optimized FFTs)
• fftwl-wisdom · create wisdom (pre-optimized FFTs)
• fftwq-wisdom · create wisdom (pre-optimized FFTs)
• ffuf · Fast web fuzzer written in Go
• fg · index of FreeBSD shell built-in commands
• fgallery · static HTML+JavaScript photo album generator
• fgcom · VoIP client for the FlightGear radio infrastructure
• fgconsole · print the number of the active VT.
• fgelev · Compute FlightGear scenery elevation for a given list of points
• fgen · IEEE 1275 Open Firmware FCode Tokenizer
• fget · download files from the FSP database
• fgetcmd · download files from the FSP database
• fgfs · the FlightGear flight simulator
• fgjs · FlightGear joystick utility
• fgpanel · FlightGear Flight Simulator Panel Rendering Engine
• fgr · File content search engine for xffm
• fgrab · download files from the FSP database
• fgrabcmd · download files from the FSP database
• fgrep · print lines that match patterns
• fgrun · FlightGear Flight Simulatior Graphical Launcher:
• fgviewer · An alternative FlightGear viewer application
• fhist · file history
• fhist_lic
• fhmtautogen · image processing library
• fhost · set environment variables
• fhostcmd · set environment variables
• fi · index of FreeBSD shell built-in commands
• fi_info · Simple utility to query for fabric interfaces
• fi_mon_sampler · Simple sampler for ofi_hook_monitor provider.
• fi_pingpong · Quick and simple pingpong test for libfabric
• fi_strerror · display libfabric error strings
• fiarith · evaluating arithmetic expressions on images as operands
• fiascotopnm · Convert compressed FIASCO image to PGM, or PPM
• ficalib · performing various calibration steps on the input images
• ficexam · No manpage for this program, utility or function.
• fiche · Receiver for command line output
• ficombine · combining (most frequently, averaging) a set of images
• ficonv · obtaining and evaluating convolution transformations
• fid · List identifiers that occur in FILENAME
• fidelio · No manpage for this program, utility or function.
• fido2-assert · get/verify a FIDO2 assertion
• fido2-cred · make/verify a FIDO2 credential
• fido2-token · find and manage a FIDO2 authenticator
• FidoAdapter · library for LC/MS data management and analysis - tools
• fieldcomb · combine two or more field frames for video animation
• fieldlines · simulation of the electric field lines between charged particles.
• fields · list fields in a table
• fierce · DNS scanner that helps locate non-contiguous IP space and hostnames against specified domains.
• fifolog · initialize, write, seek and extract data from a fifolog
• fifolog_create · initialize, write, seek and extract data from a fifolog
• fifolog_reader · initialize, write, seek and extract data from a fifolog
• fifolog_writer · initialize, write, seek and extract data from a fifolog
• fifteen_applet · Fifteen Applet for the GNOME panel.
• fig2dev · translates Fig code to various graphics languages
• fig2eps · Convert xfig files in ps|pdf, processing all the text marked as special with LaTeX.
• fig2mpdf · creation of multilayer pdf or eps figures from fig files using latex for typesetting
• fig2pdf · Convert xfig files in ps|pdf, processing all the text marked as special with LaTeX.
• fig2ps · Convert xfig files in ps|pdf, processing all the text marked as special with LaTeX.
• fig2ps2tex · generate a TeX file for including a PostScript file
• fig2sty · LaTeX Layout Generator
• fig2sxd · utility to convert .fig to .sxd
• figlet-toilet · display large colourful characters
• figtoipe · Convert FIG figures into Ipe format
• figtree · graphical phylogenetic tree viewer
• figurine · an interactive vector drawing program
• fiheader · reading and manipulating FITS header keywords
• fiign · low-level manipulation of masks associated to FITS images
• fiinfo · providing information or image stamps for images
• filament-resgen · filament material tools
• filamesh · filament material tools
• filan · Multipurpose relay (SOcket CAT)
• file · determine file type
• file-conduit-control-applet · GNOME applet to manipulate a Palm PDA
• file-info · format fasta database for use with ANFO
• file-pool-data · displays all the contents of a file pool to the standard output
• file-roller · archive manager for GNOME
• file-types-capplet · allows you to configure how files of various types should be handled.
• file2 · kanji code checker.
• file2brl · Translate an xml or a text file into an embosser-ready braille file
• file2c · convert file to c-source
• file2dgr · DGR transmission test program
• file2mod · tool from openCaster suite
• file2sdr · SDR data ingestion test program
• file2sm · shared-memory linked list data ingestion test program
• file2sock · Sends the contents of a file to a TCP or UNIX domain socket.
• file2tcp · Interplanetary Overlay Network tools, the NASA implementation of Delay-Tolerant Networking (DTN)
• file2udp · Interplanetary Overlay Network tools, the NASA implementation of Delay-Tolerant Networking (DTN)
• file65 · print information for o65 object files
• file_menu_applet · Gnome applet to browse your filesystem
• file_rx_hrpt · USRP HRPT Receiver
• FileCheck · Flexible pattern matching file verifier
• filecheck · Attempt to reimplement LLVM's FileCheck using Python.
• FileCheck-13 · Flexible pattern matching file verifier
• FileCheck-14 · Flexible pattern matching file verifier
• FileCheck-15 · Flexible pattern matching file verifier
• FileCheck-16 · Flexible pattern matching file verifier
• FileCheck-17 · Flexible pattern matching file verifier
• FileCheck-18 · Flexible pattern matching file verifier
• FileCheck-19 · Flexible pattern matching file verifier
• FileCheck-22 · Flexible pattern matching file verifier
• FileCheck-3.4 · Flexible pattern matching file verifier
• FileCheck-3.5 · Flexible pattern matching file verifier
• FileCheck-3.8 · Flexible pattern matching file verifier
• FileCheck-3.9 · Flexible pattern matching file verifier
• FileCheck-4.0 · Flexible pattern matching file verifier
• FileCheck-6.0 · Flexible pattern matching file verifier
• FileCheck-7 · Flexible pattern matching file verifier
• filecompare · show differences between files using color graphics
• fileconvert-v1-to-v2 · Converts eTktab saved files from v1 to v2
• FileConverter · library for LC/MS data management and analysis - tools
• filedumper · dump routino database contents
• filedumper-slim · dump routino database contents
• filedumperx · dump contents of planetsplitter intermediate data
• FileFilter · library for LC/MS data management and analysis - tools
• FileInfo · library for LC/MS data management and analysis - tools
• fileinfo · image processing library
• filelight · graphically display disk usage
• FileMerger · library for LC/MS data management and analysis - tools
• filename · AME
• fileofaxpp · POSTSCRIPT pretty printer
• filep · POSTSCRIPT pretty printer
• filepp · A generic file preprocessor
• fileroot · AME
• filerunner · simple and efficient file manager with FTP
• files · X file manager with drag and drop capabilities
• fileschanged · displays altered files
• filesearching · a fast unix command line interface to WWW services
• filesharelist · add/remove/list NFS and Samba file shares
• fileshareset · add/remove/list NFS and Samba file shares
• filetest · index of FreeBSD shell built-in commands
• filetraq · keep track of changes in config files.
• filetype · Infer file type and MIME type of any file/buffer.
• filext · AME
• filezilla · FTP client
• filius · educational network simulator
• fill-aa · fill in ancestral alleles
• fill-an-ac · fill or recalculate AN and AC INFO fields.
• fill-fs · Annotate VCF with flanking sequence
• fill-ref-md5 · computes MD5 sum of the reference sequence
• fill-rsIDs · fill missing rsIDs
• fillImageDB · Generic CTN manual page
• fillImageDBScript · Generic CTN manual page
• fillRSA · Generic CTN manual page
• fillRSAImpInterp · Generic CTN manual page
• filofaxp · POSTSCRIPT pretty printer
• filter · filter incoming messages before adding to mailbox
• filter-columns · filter a tab-delimited table per custom criteria
• filter-genbank · filter structured files
• filter-record · filter structured files
• filter-stop-words · filter out unindexed NCBI Entrez words
• filter.pl · filters output from murasaki based on various filters
• filter1d · Time domain filtering of 1-D time series
• filter_blat · Validate contigs by blat.
• filter_contigs · Simulate sequencing reads from references.
• filter_counts · read a ChIP-seq data file and filters out all read counts
• filter_hssp · filters an HSSP file
• filter_seer · post filtering of significant kmers
• filter_tradis_tags · bio-tradis: filters a BAM file and outputs reads
• filter_wrapper · invoke a KOffice filter as a separate process
• filterBam · filter BAM file for use with AUGUSTUS tools
• filterdiff · extract or exclude diffs from a diff file
• filterdup · Filter duplicate reads depending on sequencing depth
• filtergtf · filter a gtf annotation file for use with bamfeaturecount
• filterm · filter terminal input and/or output
• filtermail · Filter incoming e-mail to accepted, spam or ignored
• filterPolishes · utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishes
• FilterSeq.py · Filters sequences in FASTA/FASTQ files
• filtlong · quality filtering tool for Nanopore and PacBio reads
• fim · Fbi (linux framebuffer imageviewer) IMproved, an universal image viewer
• fimgs · poor man's [http://]PostScript/pdf/dvi/cbr/rar/cbz/zip viewer based on fim
• finance-quote-wrapper · internal interface between gnucash and Finance::Quote
• financialFoam · part of OpenFOAM (The Open Source CFD Toolbox).
• finch · A Pimpin' Penguin console frontend to libpurple. Instant Messaging client.
• fincore · count pages of file contents in core
• find · search for files in a directory hierarchy
• find-all-symbols-11 · manual page for find-all-symbols 11
• find-all-symbols-13 · manual page for find-all-symbols 13
• find-all-symbols-14 · manual page for find-all-symbols 14
• find-all-symbols-15 · manual page for find-all-symbols 15
• find-all-symbols-16 · manual page for find-all-symbols 16
• find-all-symbols-17 · manual page for find-all-symbols 17
• find-all-symbols-18 · manual page for find-all-symbols 18
• find-all-symbols-19 · manual page for find-all-symbols 19
• find-all-symbols-22 · manual page for find-all-symbols 22
• find-all-symbols-3.9 · manual page for find-all-symbols 3.9
• find-all-symbols-4.0 · manual page for find-all-symbols 4.0
• find-all-symbols-6.0 · manual page for find-all-symbols 6.0
• find-all-symbols-7