Section 1

rds-info · display information from the RDS kernel module
rds-ping · test reachability of remote node over RDS
rds-sink · write data from a file to an RDS socket rds-sink – write data from an RDS socket to a file
rds-stress · send messages between processes over RDS sockets
rdsquashfs · tool to examine or uncompress SquashFS filesystems
rdswap · a multi-language RD documents support tool
rdup · generate a file list suitable for making backups
rdup-backups · introduction into making backups with rdup
rdup-crypt · encrypt files received from rdup -c
rdup-gpg · encrypt files with gpg received from rdup -c
rdup-gzip · compress files received from rdup -c
rdup-hist · show files from the backup
rdup-restore · restore a filesystem from a specific backup directory
rdup-simple · create a hardlinked backup
rdup-snap · create backup in a hard link directory
rdup-snap-link · create a hard linked copy of a previous backup
rdup-tr · transform rdup output
rdup-up · update a directory tree with a rdup archive
rdx · load and execute an RDOFF object
re · programm to conver russian texts between different encodings
re-PCR · Find sequence tagged sites (STS) in DNA sequences
re2c · generate fast lexical analyzers for C/C++
re2d · generate fast lexical analyzers for D
re2go · generate fast lexical analyzers for Go
re2hs · generate fast lexical analyzers for Haskell
re2java · generate fast lexical analyzers for Java
re2js · generate fast lexical analyzers for JavaScript
re2ocaml · generate fast lexical analyzers for OCaml
re2py · generate fast lexical analyzers for Python
re2rust · generate fast lexical analyzers for Rust
re2swift · generate fast lexical analyzers for Swift
re2v · generate fast lexical analyzers for V
re2zig · generate fast lexical analyzers for Zig
reactingFoam · part of OpenFOAM (The Open Source CFD Toolbox).
reactingHeterogenousParcelFoam · part of OpenFOAM (The Open Source CFD Toolbox).
reactingMultiphaseEulerFoam · part of OpenFOAM (The Open Source CFD Toolbox).
reactingParcelFilmFoam · is the part of OpenFOAM - a free, open source CFD software.
reactingParcelFoam · part of OpenFOAM (The Open Source CFD Toolbox).
reactingTwoPhaseEulerFoam · part of OpenFOAM (The Open Source CFD Toolbox).
ReactiveNav3D-Demo · GUI demo of robot reactive navigation in 3D
ReactiveNavigationDemo · GUI demo of robot reactive navigation
read · index of FreeBSD shell built-in commands
read-expenses · Export Palm Expense application data in a text format.
read-ical · Exports the DatebookDB and/or ToDo applications to ical format.
read-notepad · List the record information found in the Palm Notepad
read-palmpix · Convert all pictures in the files given or found on a Palm handheld.
read-screenshot · Read screenshots from Palm (ScreenShotDB).
read-todos · Syncronize your Palm ToDo application's database with your desktop machine.
read-veo · Synchronize your Veo Traveler databases
read_data_file_ccrs · read_data_file_ccrs
read_data_file_dpaf · read_data_file_dpaf
read_datamatrix · datamatrix barcode reader
read_sarleader_dpaf · Read DPAF SAR leader file
read_zbar · Command line utility for reading barcodes and QR-codes
readbin · ATLC's binary file information provider
readbootlog · show contents of the boot log, stripping away control characters
readbuffer · read input from devices which don't like constant stopping and starting
readcd · read or write data Compact Discs or related madia
readdvd · is creating an image of your source dvd media or medias even if it has / they have corrupted blocks
readelf · display information about ELF files
readertest · A tool to check a reader configuration
readfilecount · read a specified number of bytes from input
readinfo · read fields from a relational
readinfo_pp · pretty print a readinfo data file
readlink · print resolved symbolic links or canonical file names
readms · Read one or more MeasurementSets
readmsg · No manpage for this program, utility or function.
readmsg.mailutils · print messages.
readmult · a multitrack wrapper for cdda2wav
readnsstate · interpret the contents of cn=replica's nsState value readnsstate /etc/dirsrv/slapd-INSTANCE/dse.ldif
readom · read or write data Compact Discs
readonly · index of FreeBSD shell built-in commands
readpe · displays information about PE files
readprofile · read kernel profiling information
readpst · convert PST (MS Outlook Personal Folders) files to mbox and other formats
readpstlog · convert a readpst logfile to text format
readPYBase · fcitx Pinyin related tools
readPYMB · fcitx Pinyin related tools
readsb · Mode-S aircraft data processor for various receiver hardware.
readseq · Reads and writes nucleic/protein sequences in various formats
readstat · read and write data set files from SAS, SPSS, and Stata
readtags · Find tag file entries matching specified names
readucks · Nanopore read de-multiplexer (read demux -> readux -> readucks, innit)
realcsh.c · A shell for running C code
realcxxsh.cc · A shell for running C++ code
realignPolishes · utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishes
realpath · print the resolved path
RealTimeSync · a folder comparison and synchronization tool (Batch)
realtimesync · a folder comparison and synchronization tool (Batch)
realvncconnect · tell a VNC server to connect to a viewer
realvncpasswd · creating and changing password files to be used with VNC
realvncpasswd.real · creating and changing password files to be used with VNC
reapr · universal tool for genome assembly evaluation
reapr-break · make broken assembly via REAPR
reapr-facheck · checks IDs in fasta file
reapr-gapresize · calculates gap sizes based on read mapping
reapr-perfectfrombam · generate perfect mapping plots from a bam file
reapr-perfectmap · make perfect uniquely mapping plot files
reapr-pipeline · run the REAPR pipeline
reapr-plots · makes Artemis plot files for a given contig
reapr-preprocess · preprocess files for REAPR run
reapr-score · calculate scores and assembly errors
reapr-seqrename · renames all sequences in a BAM file
reapr-smaltmap · map read pairs using SMALT
reapr-stats · generate REAPR stats from a BAM file
reapr-summary · make REAPR summary stats file
rearj · Converts other archive formats to .arj files
rearrange.pl
reaver · WPS Cracker
rebar · Sophisticated build-tool for Erlang projects that follows OTP principles
rebar3 · tool for working with Erlang projects
rebase-file-index · relocates file index OID pointers from one superpool to another
rebase-file-pool · relocates a file pool's internal OID pointers from one superpool to another
RebaseTensorImage · part of ANTS registration suite
rebind · modify the binding of global variables in an ELF object file
rebuild-pysnmp-mibs · Rebuilds the mib modules for pysnmp from the original mib definitions.
rebuildctl · Manage and query a rebuilderd(1)
rebuildd · rebuild daemon
rebuildd-job · rebuildd job database management
rebuilderd · Independent verification of binary packages (daemon)
rebuilderd-worker · Run rebuilds for rebuilderd
rec · Sound eXchange_ng, another Swiss Army knife of audio manipulation
rec2bin · converts biosignal data into a header file in ASCII format, and a binary file for every channel.
rec2csv · rec to csv converter
rec_control · Command line tool to control a running Recursor
rec_ng · Sound eXchange_ng, another Swiss Army knife of audio manipulation
recdel · remove records from a recfile
receive · receive files from the sendfile spool
receptor · Main controller daemon
receptor-python-worker · Receptor worker helper
receptorctl · Receptor daemon client
recfix · check a recfile for errors
recfmt · apply a template to records
recinf · print information about a recfile
recins · insert records in a recfile
recite · english text speech synthesizer
reclass · command-line interface
recode · converts files between character sets
recode-sr-latin · convert Serbian text from Cyrillic to Latin script
recoll · user interface for the Recoll full text search system
recollindex · indexing command for the Recoll full text search system
recollq · command line / standard output Recoll query command.
recon · Check if LAM can be started.
recon-cli · Allow the use of recon-ng from the command line
recon-ng · Web Reconnaissance framework
recon-rpc · RPC interface for recon-ng
recon-web · web-based user interface for Recon-ng.
reconcile · This program outputs the reconciliation that minimizes the number of duplications
reconstructPar · part of OpenFOAM (The Open Source CFD Toolbox).
reconstructParMesh · part of OpenFOAM (The Open Source CFD Toolbox).
record · records *.wav files
recordheap · record the traced heap activity of a Modula-3 program
recordio · records the input and output of a program.
recordmydesktop · record desktop sessions to an Ogg Theora video file with Vorbis audio
recordsadmin · No manpage for this program, utility or function.
recountdiff · recompute patch counts and offsets
recover · recover a deleted file
recoverdisk · recover data from disk-like devices.
recoverdm · recover files on disks with damaged sectors
recoverjpeg · recover jpeg pictures from a filesystem image
recovermov · recover movies from a filesystem image
recsel · print records from a recfile
recset · manipulate fields in a recfile
recursdir · secure remote tcp login using strong stream cipher encryption and diffie-hellman key exchanges. forward-socket - arbitrary tcp socket forwarding over a secure/encrypted channel. copydir, mirrordir - copy, mirror directory trees via a minimal set of changes, locally or over FTP, or over a secure tcp connection. recursdir - recurse through local or remote directories to command/find files or create tar files.
recursive_lower · recursively lowercase all filenames
recwav · Record an audio file from a Voicetronix hardware port
Recycler · GNUstep Workspace Manager
red · line-oriented text editor
redcarpet · Markdown prosessing like butterflies and popcorn
redcloth · Ruby Textile formatter
redet · regular expression development and execution tool
rediff · fix offsets and counts of a hand-edited diff
redir · redirect TCP connections
Redirect · xerces-c sample program
redis-benchmark · Benechmark a Redis instance
redis-check-aof · Check integrity of a Redis .AOF file
redis-check-rdb · Check integrity of Redis dumped database file
redis-cli · Command-line client to redis-server
redis-sentinel · Persistent key-value database (cluster mode)
redis-server · Persistent key-value database
redistributePar · part of OpenFOAM (The Open Source CFD Toolbox).
redland-config · script to get information about the installed version of Redland
redland-db-upgrade · upgrade older Redland databases to 0.9.12 format
rednotebook · daily journal with calendar, templates and keyword searching
redo · rebuild target files when source files have changed
redo-always · mark the current target as always needing to be rebuilt
redo-dot · print redo dependency graph for the current directory
redo-ifchange · rebuild target files when source files have changed
redo-ifcreate · rebuild the current target if source files are created
redo-log · display log messages from previous builds
redo-ood · print the list of out-of-date redo targets
redo-sources · print the list of all known redo sources
redo-stamp · detect if the current target has meaningfully changed
redo-targets · print the list of all known redo targets
redo-whichdo · show redo's search path for a .do file
redraw_maps · visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
redshift · set color temperature of display according to time of day
redshift-gtk · set color temperature of display according to time of day
reduce-font · reduce a font to a set of glyphs
reductions
redund
ree · easy editor
reentry · manage your reentry python entry point cache
ref · Display a C function header
ref-elvis · Display a C function header
ref2pmid · match PubMed citations in Reference Index XML
refblas3-test · testing programs for blas
refdb-backup · RefDB tool: back up RefDB references, notes and styles
refdb-bug · RefDB tool: writes text file containing summary of RefDB's configuration
refdb-ms · a console-based style generator for RefDB
refdb-restore · RefDB tool: restore RefDB references, notes and styles
refdb-sruserver · Simple SRU server for RefDB databases
refdb_dos2unix · RefDB tool: convert file formats from DOS to Unix
refdb_latex2utf8txt · converts bibtex bibliographic data to UTF-8 plain text
refdba · the administration client of RefDB
refdbc · the reference and note management client of RefDB
refdbctl · refdbd startup script
refdbd · the application server of RefDB
refdbib · the bibliography client of RefDB
refdbjade · transform SGML and XML documents containing RefDB bibliographies
refdbnd · creates a skeleton document and a Makefile for RefDB
refdbsru · CGI script providing SRU access to RefDB databases
refdbxml · transform XML documents containing RefDB bibliographies
refdbxp · converts short and full citation formats in SGML and XML documents containing RefDB citations.
refdes_renum · gEDA/gaf refdes renumbering utility
refeature · Read a file representing a set of features, optionally
refer · process bibliographic references for groff
referenced · No manpage for this program, utility or function.
referer2dlf · convert referer web server log file to www DLF
refile · file message in other folders
refine · Create abstract correction profile given table of absolute CIE correction values.
refine_wavelength · refine_wavelength
refineHexMesh · part of OpenFOAM (The Open Source CFD Toolbox).
refinementLevel · part of OpenFOAM (The Open Source CFD Toolbox).
refineMesh · part of OpenFOAM (The Open Source CFD Toolbox).
refineWallLayer · part of OpenFOAM (The Open Source CFD Toolbox).
reflector · retrieve and filter the latest Pacman mirrorlist
reflex · Run a command when files change
reform-boot-config · choose rootfs to boot from
reform-chat · chat on #mnt-reform
reform-check · check your setup
reform-compstat · system statistics for waybar
reform-config · select keyboard and timezone
reform-display-config · select single/dual display
reform-emmc-bootstrap · set up /boot on emmc for / on nvme
reform-flash-rescue · flash rescue image to eMMC
reform-flash-uboot · download and flash u-boot
reform-handbook · show Reform Handbook
reform-help · help with MNT Reform
reform-hw-setup · perform hardware tweaks
reform-mcu-tool · manage microcontrollers
reform-migrate · copy rootfs to device
reform-pavucontrol · kill and restart pavucontrol
reform-setup-encrypted-disk · setup encrypted disk
reform-setup-encrypted-nvme · use setup-encrypted-disk
reform-standby · suspend/wakeup tweaks
reformail · E-mail reformatting tool
reformat.sh · Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64
reformat_output · reformats output for easier reading as tsv
reformime · MIME E-mail reformatting tool
refseq-nm-cds · download NCBI RefSeq mRNAs and summarize coding regions
refurb · A tool for refurbishing and modernizing Python codebases
regapi · No manpage for this program, utility or function.
regcomp · register a component with OpenOffice.org
regconcat · Combine several Regina data files
regconvert · Convert between different Regina file formats
regdiff · Diff program for Windows registry files
regedit · Wine registry editor
regedit-development · Wine registry editor
regedit-stable · Wine registry editor
regenerator · functional JavaScript transformator
regexxer · visual regular expression search and replace
regfiledump · Dump the contents of a Regina data file
regfiletype · Identify the formats of Regina data files
regfinfo · determines information about a Windows NT Registry File (REGF)
regina · The Regina Rexx Interpreter
regina-config · Developer Configuration for The Regina Rexx interpreter
regina-engine-config · Get compiler and linker flags to build software against Regina
regina-gui · Regina's graphical user interface
regina-helper · Helper utility for working with a Regina installation
regina-kde · Obsolete command for Regina's graphical user interface
regina-python · Regina's command-line Python interface
register-common-lisp-implementation · registers a Common Lisp Implementation
register-common-lisp-source · registers a Common Lisp source package
register-plist · smart diff and registration of packing-lists
register-python-argcomplete · register-python-argcomplete - argcomplete utility script
register-python-argcomplete3 · register-python-argcomplete - argcomplete utility script
registerRTSPStream · various utilities to test receiving and streaming of RTP streams
registrar · GroupKit registration daemon
regjsparser · Parser of Javascript regular expressions
reglookup · Windows NT+ registry reader/lookup tool
reglookup-recover · Windows NT+ registry deleted data recovery tool
reglookup-timeline · Windows NT+ registry MTIME timeline generator
regolith-powerd · Power Settings Daemon for Regolith Wayland Session
regorge · measures I/O performance and/or generates I/O load
regpatch · Applies registry patches to registry files
regripper · forensic analysis of Registry hives
regshell · Windows registry file browser using readline
regsvr32 · Wine DLL Registration Server
regsvr32-development · Wine DLL Registration Server
regsvr32-stable · Wine DLL Registration Server
regtest · Global Consciousness Project REG Software
regtree · Text-mode registry viewer
regular · No manpage for this program, utility or function.
rehash · index of FreeBSD shell built-in commands
RehearseCode · run through Mentor CodeView source file annotations.
reify · a small utility that reifies logic programs
reindex · a collection of tools for xbase database files
reindexdb · reindex a PostgreSQL database
reinteract · worksheet-based graphical Python shell
rekal · memory forensics framework
rekall · memory forensics framework
rekey · Binary key regeneration for kaya web applications
rekonq · A lightweight Web Browser for KDE based on WebKit
rekor-cli · Rekor command line interface tool
rel-cdcontrol · No manpage for this program, utility or function.
rel2gpx · create GPX-Tracks from OSM relation
relational · Implementation of Relational algebra.
relational-cli · Implementation of Relational algebra.
relatorio-render · manual page for usage: relatorio-render [-h] -i INPUT [-o OUTPUT] [-d DATA]
relaytest · attempt to use SMTP to relay to a DSBL-compliant host
relaytool · Generate a file that can be used instead of linking directly against a library
release · Deprecated program
releaseforge · alternative to the SourceForge File Release System (FRS)
reload_armor · Slash spamarmors
reload_gtk_apps · small utility for sending signal to reload theme in Gtk+ programs.
reloc65 · relocator for o65 object files
relpath-2.6.4 · The Free Pascal file deletion tool.
relpath-3.0.0 · The Free Pascal file deletion tool.
relpath-3.0.4 · The Free Pascal file deletion tool.
relpath-3.2.0 · The Free Pascal file deletion tool.
relpath-3.2.2 · The Free Pascal file deletion tool.
reLyX
rem · Invoke Remind with a default filename
rem2html · Convert the output of "remind -pp" or "remind -ppp" to HTML
rem2ps · draw a PostScript calendar from Remind output
remadmin · generic graphical user interface
remake · GNU make utility to maintain groups of programs
remaster-compose · iso composition tool of remaster-iso
remaster-extract · iso extraction tool of remaster-iso
remaster-squashfs-editor · iso filesystem.squashfs editor tool of remaster-iso
remctl · Remote execution tool
remind · a sophisticated reminder service
reminders · Exports your Palm Datebook database into a 'remind' data file format
remmina
remmina-applet · GNOME applet for Remmina.
remmina-file-wrapper
remmina-gnome · Script file to start common GNOME Shell interfaces
remote-logon-config-agent · Retrieve JSON based remote logon information
remote-tty · connect to a ttysrv serial console instance
remote-viewer · a simple remote desktop client
RemoteDesk · Remote Windows access tool for GNUstep
remotetrx · The SvxLink remote transceiver application
remotezip · Access zip file content hosted remotely without downloading the full file
remount · display the list of volumes mounted by vold, and control vold.
remove-duplicates · remove duplicates of the same file in the current directory
remove_brackets · remove delimiters from text
remove_long_seqs · visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
remove_short_seqs · visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
remove_tradis_tags · bio-tradis: remove transposon sequence and quality tags from the read strings
removeDup · toolkit for processing next-gen sequencing data
removeDuplicate · utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishes
removeFaces · part of OpenFOAM (The Open Source CFD Toolbox).
removePcrFromMipe · Removes PCR data from MIPE file based on MIPE version v0.7 arguments: * mipe_file * STDIN: PCR ID
removeSbeFromMipe · Removes SBE data from MIPE file based on MIPE version v0.9 arguments: * mipe_file * STDIN: tab-delimited list of data, in the following order: PCR ID, SNP ID, SBE ID
removeSnpFromMipe · Removes SNP data from MIPE file based on MIPE version v0.9 arguments: * mipe_file * STDIN: tab-delimited list of data, in the following order: PCR ID, SNP ID
removing-npm · Cleaning the Slate
remrun · copy a file to a remote host and execute it
remsync · GNU sharutils
remuco-amarok · A daemon which allows control to Amarok via bluetooth
remuco-audacious · A daemon which allows control to Audacious via bluetooth
remuco-banshee · A daemon which allows control to Banshee via bluetooth
remuco-clementine · A daemon which allows control to Clementine via bluetooth
remuco-gmusicbrowser · A daemon which allows control to Banshee via bluetooth
remuco-mpd · A daemon which allows control to Banshee via bluetooth
remuco-mplayer · A daemon which allows control to Banshee via bluetooth
remuco-okular · A daemon which allows control to Okular via bluetooth
remuco-quodlibet · A daemon which allows control to Banshee via bluetooth
remuco-report · report Remuco client device information
remuco-tvtime · A daemon which allows control to Banshee via bluetooth
remuco-vlc · A daemon which allows control to Banshee via bluetooth
remuco-xmms2 · A daemon which allows control to Banshee via bluetooth
remunge · MUNGE credential benchmark
remux · variety of tools that transform between various MPEG stream formats
rename · rename files
rename-flac · CLI tool to rename FLAC files
rename.ul · rename files
renamer · undocumented LADR4 applications
renattach · rename/delete dangerous email attachments
render · Raster3D molecular graphics package rendering program
render_expired · expires a list of map tiles so that they get re-rendered.
render_hlg · render_hlg
render_list · renders a list of map tiles by sending requests to a rendering daemon.
render_old · renders a list of map tiles by sending requests to a rendering daemon.
render_speedtest · Benchmark tile rendering with renderd.
rendercheck · simple tests of the X Render extension.
renderd · Rendering daemon for rendering OpenStreetMap tiles.
rendersvg · an SVG rendering application
renice · alter priority of running processes
reniced · renice running processes based on regular expressions
renum · Bywater BASIC interpreter/shell
renumberMesh · part of OpenFOAM (The Open Source CFD Toolbox).
reorder-columns · reorder columns of a tab-delimited file
reordercap · Reorder input file by timestamp into output file
reordertp · Reorders incoming packets and reconstitutes the original RTP stream.
ReorientTensorImage · part of ANTS registration suite
rep · Librep Interpreter
rep-config · script to get information about the installed version of LIBREP
rep-remote · provides a protocol for executing all of librep's file operations on that host
rep-xgettext · extract i18n strings from lisp scripts.
repack-file-index · reorganize a FramerD file index
repack-file-pool · reorganize a FramerD file pool
repair · toolkit for processing next-gen sequencing data
REPcover · alignment-based scrubbing pipeline for DNA sequencing reads
repdoc · strip doc-strings from C source.
repeat · index of FreeBSD shell built-in commands
repeat-match · package for sequence alignment of multiple genomes
repeatmasker-recon · finds repeat families from biological sequences
repeatoire · part of mauveAligner package
repeats2anchors.pl
repeatviz.pl
repetier-host · program to control 3D printers
rephrase · Specialized passphrase recovery tool for GnuPG
repl · reply to a message
repl-monitor · Directory Server replication monitor
replace · a string-replacement utility
replaceit · A quick, light and effective text replacement tool
replacekey · replace keywords in a FITS header
replay · play back typescripts, using timing information
replaygain · single file Replay Gain editor
replayheap · replay a recorded Modula-3 heap activity
replcon · SELinux file context replacement tool
replica_exchange · Work Queue application for running replica exchange simulations using ProtoMol
Replication · Example of using QuantLib
replmarks · replace triangular markers in a RADIANCE scene description
repmgr · PostgreSQL replication manager
Repo · Example of using QuantLib
repo · repository management tool built on top of git
repo-abandon · repo abandon - manual page for repo abandon
repo-branch · repo branches - manual page for repo branches
repo-branches · repo branches - manual page for repo branches
repo-checkout · repo checkout - manual page for repo checkout
repo-cherry-pick · repo cherry-pick - manual page for repo cherry-pick
repo-diff · repo diff - manual page for repo diff
repo-diffmanifests · repo diffmanifests - manual page for repo diffmanifests
repo-download · repo download - manual page for repo download
repo-forall · repo forall - manual page for repo forall
repo-gc · repo gc - manual page for repo gc
repo-gitc-delete · repo gitc-delete - manual page for repo gitc-delete
repo-gitc-init · repo gitc-init - manual page for repo gitc-init
repo-graph · redirecting to DNF repograph Plugin Output a full package dependency graph in dot format.
repo-grep · repo grep - manual page for repo grep
repo-help · repo help - manual page for repo help
repo-info · repo info - manual page for repo info
repo-init · repo init - manual page for repo init
repo-list · repo list - manual page for repo list
repo-manifest · repo manifest - manual page for repo manifest
repo-overview · repo overview - manual page for repo overview
repo-prune · repo prune - manual page for repo prune
repo-rebase · repo rebase - manual page for repo rebase
repo-rss · generates an RSS feed from one or more Yum repositories
repo-selfupdate · repo selfupdate - manual page for repo selfupdate
repo-smartsync · repo smartsync - manual page for repo smartsync
repo-stage · repo stage - manual page for repo stage
repo-start · repo start - manual page for repo start
repo-status · repo status - manual page for repo status
repo-sync · repo sync - manual page for repo sync
repo-upload · repo upload - manual page for repo upload
repo-version · repo version - manual page for repo version
repo-wipe · repo wipe - manual page for repo wipe
repo2solv · convert repository metadata into a solv file
repobench · generate and/or display reposurgeon benchmarks
repoclosure · redirecting to DNF repoclosure Plugin Display a list of unresolved dependencies for repositories.
repocutter · surgical and filtering operations on Subversion dump files
repod-file
repodiff · redirecting to DNF repodiff Plugin Display a list of differences between two or more repositories
repodiffer · report differences between repository histories
repomanage · redirecting to DNF repomanage Plugin Manage a repository or a simple directory of rpm packages.
repomapper · update and manipulate contributor maps
repomdxml2solv · convert a repomd.xml file into a solv file
repopush · safely rsync a package repository to another location
repoquery · query information from Yum repositories
report · No manpage for this program, utility or function.
report-hw · dump information on the system's hardware
report.cgi · CGI front-end to xymongen reporting
report.gui · No manpage for this program, utility or function.
report2.byte · OCaml code generator to read/write XML file into/from OCaml structure.
report2.gui.byte · GUI to edit report2.byte XML file.
reportAlignmentDifferences · utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishes
reportbug · reports a bug to a debbugs server
reportbug-ng · An easy to use alternative to reportbug
reportlog.cgi · CGI program to report service availability log
reportview · ask KWeatherService to display a weather report
repose · an Archlinux repository compiler
reposurgeon · surgical operations on repositories
reposync · redirecting to DNF reposync Plugin Synchronize packages of a remote DNF repository to a local directory.
repotool · operate on aany supporteed repository type in a uniform way
repotrack · track a package and its dependencies and download them
reppu · A network rendering program for blender
REPqv · alignment-based scrubbing pipeline for DNA sequencing reads