Section 1

• adnsresfilter · Asynchronous-capable DNS client utilities
• adp · afnix documentation processor
• adpcmtopvf · utility programs for editing voice files
• adplay · AdPlay/UNIX console-based OPL2 audio player
• adplugdb · AdPlug database maintenance utility
• adr · tool for working with Architecture Decision Records (ADRs)
• adr_parse · a simple utility to convert Opera bookmarks to XBEL
• adserver · Simple address book server
• adsf · a dead simple fileserver
• adsh · internal helper program for apt-dater
• adt-build-lxc · Create or update autopkgtest container for adt-virt-lxc
• adt-buildvm-ubuntu-cloud · Create Ubuntu cloud image based VM for adt-virt-qemu
• adt-run · test an installed binary package using the source package's tests
• adt-testreport-onepackage · choose one package and test it with adt-run
• adt-testreport-runloop · repeatedly choose and test packages
• adt-virt-chroot · autopkgtest virtualisation server using a chroot
• adt-virt-lxc · autopkgtest virtualisation server using LXC
• adt-virt-null · autopkgtest null virtualisation server
• adt-virt-qemu · autopkgtest virtualisation server using QEMU
• adt-virt-schroot · autopkgtest virtualisation server using a schroot
• adt-virt-ssh · autopkgtest virtualisation server using SSH
• adt-virt-xenlvm · autopkgtest virtualisation server using Xen and LVM
• adtool · Command-line utility for the Addresses framework
• adtrace · compute MAC/IP information of a PCAP file
• adtrack2 · userfriendly tracker aimed for the OPL3 FM-chip
• AdunCore · core module of the Adun molecular simulator
• AdunServer · server for the Adun molecular simulator
• advdef · AdvanceCOMP Deflate Compression Utility
• advene · Annotate Digital Videos, Exchange on the NEt
• advfs · convert and extract a filesystem to/from a cloop volume
• advi
• advi.bin
• advmng · AdvanceCOMP MNG Compression Utility
• advpng · AdvanceCOMP PNG Compression Utility
• advzip · AdvanceCOMP ZIP Compression Utility
• adzapper · squid_redirect advertisement zapper
• adzapper.wrapper · squid_redirect advertisement zapper wrapper
• adzapper2ab · adzapper to Mozilla AdBlock generation utility
• adzapper2konq · adzapper to Konqueror AdBlocK generation utility
• ae · tiny full-screen text editor
• ae-cvs-ci · checkin a change set to CVS
• ae-repo-ci · redundant repository checkin
• ae-sccs-put · put sccs version
• ae_c · set change number
• ae_diff2htm · wraps the diff2html command
• ae_p · set project name
• aeannotate · annotated source file listing
• aeb · build a change
• aebuffy · watch for changes
• aec · compress or expand files
• aeca · modify the attributes of a change
• aecat · display an aewan document
• aecd · change directory
• aecho · send AppleTalk Echo Protocol packets to network hosts
• aechown · set change owner
• aeclean · clean files from development directory
• aeclone · make an exact copy of a change
• aecomp · compare two changes
• aecomplete · command completion
• aecp · copy a file into a change
• aecpu · reverse action of aecp
• aecvsserver · serve CVS client protocol against Aegis projects
• aed · find differences between a change and the baseline
• aedb · begin development of a change
• aedbu · undo the effects of aedb
• aede · complete development of a change
• aede-policy · check change set is ready for aede
• aedeu · recall a change for further development
• aediff · file differences between deltas
• aedist · remotely distribute a change
• aedn · assign a symbolic name to a project delta
• aee · another (easy) editor
• aeedit · edit a change's files
• aefa · modify the attributes of a file
• aefind · search for files in directory hierarchy
• aefinish · finish a change
• aefp · calculate file fingerprint
• aeget · Aegis CGI file access
• aegis · project change supervisor
• aegis-virus-scanner · A virus scanner for Linux/Unix systems
• aegis.cgi · Aegis web interface script
• aegisub-2.1 · advanced subtitle editor
• aegisub-3.1 · advanced subtitle editor
• aegisub-3.2 · advanced subtitle editor
• aeib · begin integrating a change
• aeibu · reverse the aeib command
• aeif · fail a change integration
• aeifail · fail a change integration
• aeimport · import foreign repository into Aegis
• aeintegratq · integrate changes into projects
• aeip · pass a change integration
• aeipass · pass a change integration
• ael · list (possibly) interesting things
• aelcf · list change files
• aelic
• aelock · take a lock while a command runs
• aelpf · list project files
• aels · annotated directory listing
• aemakeflic · produce an animation from an aewan document
• aemeasure · simple file metrics
• aemt · make branch file transparent
• aemtu · no longer make branch file transparent
• aemv · rename one or more files as part of a change
• aemvu · undo the rename a file as part of a change
• aena · add a new administrator to a project
• aenbr · create a new branch
• aenbru · remove a branch
• aenc · add a new change to a project
• aencu · remove a new change from a project
• aend · add new developers to a project
• aenf · add new files to be created by a change
• aenfu · remove new files from a change
• aeni · add new integrators to a project
• aenpa · create a new project alias
• aenpr · create a new project
• aenrls · create a new project from an old-style project.
• aenrv · add new reviewers to a project
• aent · add a new test to a change
• aentu · remove new tests from a change
• aeolus · synthesised pipe organ emulator
• aepa · modify the attributes of a project
• aepatch · send and receive changes as patches
• aepromptcmd · change prompt color by change state
• aer · report generator
• aera · remove administrators from a project
• aerb · begin a change review
• aerbu · stop reviewing a change
• aerc · a pretty good email client.
• aerc-search · search and filter patterns and options for aerc(1)
• aerd · remove developers from a project
• aerect · draw a rectangle
• aereport · report generator
• aerevml · send and receive RevML change sets
• aerf · fail a change review
• aerfail · fail a change review
• aeri · remove integrators from a project
• aerm · add files to be deleted to a change
• aermpr · remove project
• aermu · remove files to be deleted from a change
• aerp · pass a change review
• aerpa · remove a project alias
• aerpass · pass a change review
• aerpu · rescind a change review pass
• aerrv · remove reviewers from a project
• aes2501 · program to acquire fingerprints from aes2501 scanner
• aesfix · Correct bit errors in an AES key schedules
• aeskeyfind · Locates 128-bit and 256-bit AES keys in a captured memory image.
• aeskulap · OpenSource DICOM Viewer
• aespasswd · Used to create and manage an AES keyfile.
• aespipe · AES encrypting or decrypting pipe
• aesub · substitute and echo strings
• aesubunit · run SubUnit tests
• aesvt · simple version tool
• aet · run tests
• aetar · remotely distribute a change via tar
• aev · give version information
• aevol_create · an in silico experimental evolution platform
• aevol_misc_ancestor_stats · an in silico experimental evolution platform
• aevol_misc_ancstats · an in silico experimental evolution platform
• aevol_misc_compute_pop_stats · an in silico experimental evolution platform
• aevol_misc_create_eps · an in silico experimental evolution platform
• aevol_misc_extract · an in silico experimental evolution platform
• aevol_misc_fixed_mutations · an in silico experimental evolution platform
• aevol_misc_gene_families · an in silico experimental evolution platform
• aevol_misc_lineage · an in silico experimental evolution platform
• aevol_misc_robustness · an in silico experimental evolution platform
• aevol_misc_view · an in silico experimental evolution platform
• aevol_misc_view_generation · an in silico experimental evolution platform
• aevol_modify · an in silico experimental evolution platform
• aevol_propagate · an in silico experimental evolution platform
• aevol_run · an in silico experimental evolution platform
• aewan · An ascii-art editor
• aewm++_appbar · a small application launcher
• aewm++_fspanel · small panel
• aewm++_setrootimage · puts a nice diagonal gradient image on the root window
• aewm++_xsession · keeps an xsession alive
• aexml · Aegis database to XML
• aexver · graphical file history
• af · emacs-like mail reader.
• afack · alias file checker for af.
• afcat · Output contents of an image file to stdout.
• afcclient · Interact with AFC/HouseArrest service on a connected device.
• afclient · active port forwarder client
• afdconnectivity · diffusion-weighted MRI white matter tractography
• afdko · wrapper for afdko utilities
• afetch
• afew · afew Documentation afew is an initial tagging script for notmuch mail: Its basic task is to provide automatic tagging each time new mail is registered with notmuch. In a classic setup, you might call it after notmuch new in an offlineimap post sync hook or in the notmuch post-new hook. It can do basic thing such as adding tags based on email headers or maildir folders, handling killed threads and spam. fyi: afew plays nicely with alot, a GUI for notmuch mail ;) Contents:
• affcat · Output contents of an image file to stdout.
• affcompare · compare the contents of an ISO file to an AFF file
• affconvert · convert files between RAW and AFF formats
• affcopy · reorder and recompress AFF files
• affcrypto · handle encryption issues
• affdiskprint · create a diskprint AFF structure
• Affiche · an application to "stick" little notes on the desktop
• affinfo · print information about an AFF file
• affix · fix a corrupted AFF file
• affrecover · recover broken pages of an AFF file
• affsegment · segment manipulation tool
• affsign · sign an existing AFF file
• affstats · print specific statistics about one or more AFF files
• affuse · provide access to AFF containers
• affverify · verify the digital signature on a signed file
• affxml · print AFF information as XML
• afile · a Module Access File Generator
• afio · manipulate archives and files
• afl-analyze · file format analyzer for American Fuzzy Lop (afl)
• afl-clang · clang wrapper for American Fuzzy Lop (afl)
• afl-clang++ · clang++ wrapper for American Fuzzy Lop (afl)
• afl-clang-fast · clang wrapper for American Fuzzy Lop (afl)
• afl-clang-fast++ · clang++ wrapper for American Fuzzy Lop (afl)
• afl-cmin · corpus minimization tool for American Fuzzy Lop (afl)
• afl-cov · code coverage for afl (American Fuzzy Lop)
• afl-fuzz · code fuzzer for American Fuzzy Lop (afl)
• afl-g++ · g++ wrapper for American Fuzzy Lop (afl)
• afl-gcc · gcc wrapper for American Fuzzy Lop (afl)
• afl-gotcpu · CPU gizmo for American Fuzzy Lop (afl)
• afl-plot · progress plotting utility for American Fuzzy Lop (afl)
• afl-showmap · map display utility for American Fuzzy Lop (afl)
• afl-tmin · test case minimizer for American Fuzzy Lop (afl)
• afl-whatsup · status check tool for American Fuzzy Lop (afl)
• afm2afm · reencode an afm file
• afm2pl · convert AFM font metrics to TeX pl font metrics
• afm2tfm · convert Adobe font metrics to TeX font metrics
• afmtodit · adapt Adobe Font Metrics files for groff PostScript and PDF output
• afnix-adp · afnix documentation processor
• afnix-axc · afnix cross compiler
• afnix-axd · afnix cross debugger
• afnix-axi · afnix cross interpreter
• afnix-axl · afnix cross librarian
• afnix-axp · afnix xml processor
• afnix::adp · afnix documentation processor
• afnix::axp · afnix xml processor
• afp_client
• afp_lantest · AFP protocol tests
• afp_logintest · AFP protocol tests
• afp_spectest · AFP protocol tests
• afp_speedtest · AFP protocol tests
• afparg · AFP protocol tests
• afpcmd · Transfer files over the networking using the Apple Filing Protocol (AFP)
• afpfsd · Daemon to manage AFP sessions for the afpfs-ng FUSE client.
• afpgetstatus · Get simple status information from an AFP server without logging into it.
• afpldaptest · Syntactically check LDAP parameters in afp.conf
• afppasswd · AFP password maintenance utility
• afpstats · List AFP server statistics
• afptest · AFP protocol tests
• afs · Introduction to AFS commands
• afs-up · Recursively copy directories, preserving AFS metadata
• afs_compile_et · Produce error text tables for compilation
• afserver · active port forwarder server
• afslog · obtain AFS tokens
• afsmonitor · Monitors File Servers and Cache Managers
• afssh · wrapper around ssh-agent-filter and ssh
• afstool · tool for AFS maintence
• aft · "free form" document preparation system
• aft-mtp-cli · reliable MTP client with minimalistic UI
• aft-mtp-mount · reliable MTP client with minimalistic UI
• afterimage-config · script to get information about the installed version of libAfterImage
• afterimage-libs · script to get information about the installed version of libAfterImage
• afterstepdoc · No manpage for this program, utility or function.
• afuse · automounting file system implemented in user-space using FUSE
• ag · The Silver Searcher. Like ack, but faster.
• ag++ · a frontend to ac++ and g++
• ag-backup · Backup the libaccounts database
• ag-tool · Edit the libaccounts database
• agave · colorscheme designer for the gnome desktop
• agbrowser · The KDE 2 frontend to the AudioGalaxy Linux client
• age · simple, modern, and secure file encryption
• age-inspect · inspect age(1) encrypted files
• age-keygen · generate age(1) key pairs
• age-plugin-batchpass · non-interactive passphrase encryption plugin for age(1)
• agedu · correlate disk usage with last-access times to identify large and disused data
• Agenda · calendar manager for GNUstep
• agent-transfer · copy a secret key from gpg-agent to ssh-agent
• agentxtrap · send an AgentX NotifyPDU to an AgentX master agent
• aget · A multithreaded HTTP download accelerator
• aggregartp · Splits a single RTP stream to several contribution links with load balancing.
• aggregate · optimise a list of route prefixes to help make nice short filters
• aggregate-ios · optimise a concatenated set of cisco/IOS prefix filters to help make them nice and short.
• agh-profile-gen
• aghermann
• agistudio · an AGI adventure game development environment
• agmrancid · Cisco configuration filter
• agpg · wrapper around gpg that provides passphrases for you
• agreety · A text-based greeter for greetd
• agrep · print lines approximately matching a pattern
• agsatellite · wrapper for AGSatellite
• agsatellite-config · AGSatellite client configuration
• agsync · mediates a AvantGo session between an AvantGo server and an Pocket PC connected via SynCE.
• agtback
• agtc
• agtexe · No manpage for this program, utility or function.
• agtl · tool for paperless geocaching
• agtman-UNDONE · No manpage for this program, utility or function.
• agtproj · default project environment builder
• agtses
• agusload · load a GUS-format patch file into the AWE32 RAM
• aha · Convert ANSI escape sequences to HTML
• ahlt · Argante High Level Language Translator
• ahost · print the A or AAAA record associated with a hostname or IP address
• ahttp · command-line client for RIPE Atlas
• aiccu · Automatic IPv6 Connectivity Configuration Utility
• aid · Query ID database and report results.
• aida2flat · Convert AIDA data files to a flat format
• aida2root · Convert AIDA XML format to ROOT TGraph object
• aide · Advanced Intrusion Detection Environment
• aide-attributes · decode and compare hex-encoded attribute numbers
• aide.real · Advanced Intrusion Detection Environment
• aidl · Java bindings generator of AIDL interfaces
• aidl-cpp · C++ bindings generator of AIDL interfaces
• aiksaurus · English-language thesaurus
• aimage · tool to create forensic copy of a device in aff format.
• aimk · Portable make wrapper script
• ainsl · AppendIfNoSuchLine
• aiocoap-client · query CoAP servers from the command line aiocoap-client is a simple command-line tool for interacting with CoAP servers
• aiocoap-fileserver · File server for CoAP A simple file server that serves the contents of a given directory in a read-only fashion via CoAP. It provides directory listings, and guesses the media type of files it serves. It follows the conventions set out for the kitchen-sink fileserver, optionally with write support, with some caveats:
• aiocoap-proxy · forward and reverse proxy server for CoAP a plain CoAP proxy that can work both as forward and as reverse proxy
• aiocoap-rd · Resource Directory server A plain CoAP resource directory according to RFC9176 Known Caveats:
• aiohttp-wsgi-serve · run a WSGI application
• aiosmtpd · asyncio based SMTP server Provides an asynchronous, RFC 5321 compliant Simple Mail Transfer Protocol (SMTP) server that supports customizable extensions.
• aiowsgi-serve · minimalist WSGI server using async
• air-quality-sensor · User space driver for AppliedSensor's Indoor Air Monitor
• aircrack-ng · a 802.11 WEP / WPA-PSK key cracker
• airdecap-ng · decrypt a WEP/WPA crypted pcap file
• airdecloak-ng · Removes wep cloaked framed from a pcap file.
• airdriver-ng · automatically install/uninstall and patch drivers and 802.11 stacks
• airdrop-ng · A rule based wireless deauth tool
• aireplay-ng · inject ARP-request packets into a wireless network to generate traffic
• airgraph-ng · a 802.11 visualization utility
• airmon-ng · bash script designed to turn wireless cards into monitor mode
• airodump-join · a support tool for airgraph-ng that allows you to join the airodump output files.
• airodump-ng · a packet capture tool for aircrack-ng
• airolib-ng · manage and create a WPA/WPA2 pre-computed hashes tables
• airport-config · Configurator for the original Apple AirPort Base Station ("Graphite") and the Lucent RG-1000 base station
• airport-hostmon · Host monitor for the original Apple AirPort Base Station ("Graphite"), the Lucent RG-1000 base station and the Apple AirPort Extreme Base Station
• airport-linkmon · Wireless link quality monitor for the original Apple AirPort Base Station ("Graphite") and the Lucent RG-1000 base station
• airport-modem · Modem monitoring and hangup utility for the original Apple AirPort Base Station ("Graphite"), the Lucent RG-1000 base station and the Apple Airport Extreme base station
• airport2-config · Configurator for the Apple AirPort Extreme Base Station ("Snow")
• airport2-ipinspector · WAN monitoring utility for the Apple AirPort Extreme Base Station ("Snow")
• airport2-portinspector · Port maps inspector for the Apple AirPort Extreme Base Station ("Snow")
• airr-tools · Data Representation Standard library for antibody and TCR sequences
• airscan-discover · Discover sane-airscan compatible scanners
• airsev-ng · a wireless card server
• airsnort · WEP key cracking tool
• airspy_gpio · read and write gpio pin values
• airspy_gpiodir · reconfigure GPIO Direction
• airspy_info · probe device and show configuration
• airspy_lib_version · display AirSpy lib version
• airspy_r820t · The Airspy is a tiny and efficient software defined radio receiver. This application lets the user probe the device and show configuration.
• airspy_rx · probe device and show configuration
• airspy_si5351c · chip register read/write tool
• airspy_spiflash · program Flash
• airspyhf_calibrate · show and set ppb calibration value
• airspyhf_gpio · read and write gpio pin values
• airspyhf_info · probe device and show configuration
• airspyhf_lib_version · display AirSpyHF lib version
• airspyhf_rx · probe device and show configuration
• airtun-ng · a virtual tunnel interface creator for aircrack-ng
• aisdecode · Library for decoding maritime AIS messages
• aish · ish/base64/uuencoded_file converter
• aishmv · ish/base64/uuencoded_file converter
• aj · command-line launchers for load-time weaving
• aj-snapshot · store and restore snapshots of JACK and/or ALSA connections
• aj5 · command-line launchers for load-time weaving
• ajaxterm · Web based terminal written in python
• ajbrowser · GUI to compile programs with ajc and navigate crosscutting structure
• ajc · compiler and bytecode weaver for the AspectJ and Java languages
• ajdb · aspect oriented compiler for Java.
• ajdoc · generate HTML API documentation, including crosscutting structure
• akaidump · Dump an AKAI media (i.e. CDROM) as disk image file to your HD.
• akaiextract · Extract audio samples from an AKAI media or AKAI disk image file.
• aklog · Obtain tokens for authentication to AFS
• aklog-kafs · AFS Kerberos authentication tool
• akonadictl · Akonadi server manipulation tool
• akregator · a KDE RSS Aggregator
• al · Mono Assembly Linker
• al.pnet · the Intermediate Language (IL) assembly linker
• al1 · Mono Assembly Linker
• al2 · Mono Assembly Linker
• alacarte · Edit freedesktop.org menus
• alacritty · A fast, cross-platform, OpenGL terminal emulator.
• alacritty-msg · Send messages to Alacritty.
• aladin · interactive software sky atlas
• alamin · Alamin GSM SMS Gateway
• alarm · set the alarm power time and or date of a Toshiba laptop
• alarm-clock · Alarm Clock for GNOME Desktop
• alarm-clock-applet · Alarm Clock for your notification area
• alarmclock · Alarm Clock for GTK+ Environments
• alarmd · KDE Alarm daemon.
• alb_xml2sexp · Albert's XML to symbolic-expression converter
• albatross · a tool for finding fonts that contain a given (Unicode) glyph.
• album2m3u · create playlist file
• album2pls · create playlist file
• albumshaper · a drag-n-drop photo album manager
• AlbumShaper.bin · a drag-n-drop photo album manager
• alc · the aMule eD2k link creator
• alc_bug_report
• alc_origin
• alcbanner · Display a standardized banner for Alliance tools
• alcc · text based eD2k links calculator for aMule
• alcovebook2fot · Easily formats SGML/XML documents using DSSSL style-sheets
• alcovebook2html · Easily formats SGML/XML documents using DSSSL style-sheets
• alcovebook2mif · Easily formats SGML/XML documents using DSSSL style-sheets
• alcovebook2pdf · Easily formats SGML/XML documents using DSSSL style-sheets
• alcovebook2ps · Easily formats SGML/XML documents using DSSSL style-sheets
• alcovebook2rtf · Easily formats SGML/XML documents using DSSSL style-sheets
• aldo · A fully console morse code trainer written in ISO C++.
• ale · a synthetic capture engine and renderer
• ale-bin · a synthetic capture engine and renderer
• alembic · lightweight database migration tool for usage with the SQLAlchemy
• aleph · extended TeX with Unicode and bidirectional typesetting support
• alevt · a teletext browser for analogue and DVB channels.
• alevt-cap · simple capture of teletext pages
• alevt-date · display/set time received via Teletext
• alevtd · webserver for videotext pages
• alex · the lexical analyser generator for Haskell
• alex-2.0 · the lexical analyser generator for Haskell
• alexandria · manage your book collection
• alf · Alignment free sequence comparison
• alfa · automated line fitting algorithm
• alfilldb · Add/update information of music files in the AudioLink database
• algobox · algorithmics introduction software
• algotutor · an interactive program for observing the intermediate steps of algorithms.
• ali · list mail aliases
• ali2gff · Module to translate a MUMmer output files into gff formatted output.
• alias · index of FreeBSD shell built-in commands
• aliascheck · check for existence of mail alias
• alice · an Altogether Lovely Internet Chatting Experience
• alicia · Make micromodifications or queries to the overrides table
• alicq · Flexible ICQ client in pure Tcl/Tk
• alien · Convert or install an alien binary package
• alien_hunter · Interpolated Variable Order Motifs for identification of horizontally acquired DNA
• align-columns · align the columns of tab-delimited input
• align2kog.pl · converts an alignment into a kog file
• align_dna · spliced align genomic sequence with cDNA
• align_image_stack · Align overlapping images for HDR or focus stack creation
• alignment-cat · Concatenate several alignments (with the same sequence names) end-to-end.
• alignment-chop-internal · Remove ancestral sequences from an alignment.
• alignment-consensus · Construct a consensus alignment to summarize an alignment sample.
• alignment-distances · Compute distances between alignments.
• alignment-draw · Draw an alignment to HTML, optionally coloring residues by AU.
• alignment-find · Find the last (or first) FASTA alignment in a file.
• alignment-gild · Annotate each residue in the alignment according to the probability that it should align to the hypothetical root character in its column.
• alignment-indices · Show the alignment in terms of the index of each character in its sequence.
• alignment-info · Show useful statistics about the alignment.
• alignment-max · Construct a posterior decoding alignment to summarize an alignment sample.
• alignment-thin · Remove sequences or columns from an alignment.
• alignment-translate · Translate a DNA/RNA alignment into amino acids.
• alignmentProjector · part of mauveAligner package alignmentProjector - part of mauveAligner package backbone_global_to_local - part of mauveAligner package bbAnalyze - part of mauveAligner package createBackboneMFA - part of mauveAligner package getAlignmentWindows - part of mauveAligner package getOrthologList - part of mauveAligner package makeBadgerMatrix - part of mauveAligner package mauveToXMFA - part of mauveAligner package mfa2xmfa - part of mauveAligner package projectAndStrip - part of mauveAligner package randomGeneSample - part of mauveAligner package scoreAlignment - part of mauveAligner package stripGapColumns - part of mauveAligner package stripSubsetLCBs - part of mauveAligner package toGrimmFormat - part of mauveAligner package toMultiFastA - part of mauveAligner package toRawSequence - part of mauveAligner package uniqueMerCount - part of mauveAligner package uniquifyTrees - part of mauveAligner package xmfa2maf - part of mauveAligner package
• alignments-diff · Align two alignments for comparison.
• AlignRecords.py · Repertoire clonal assignment toolkit (Python 3)
• AlignSets.py · Multiple aligns input sequences by group
• aliki · Measurement tool for Impulse Responses
• aliki-rt · Measurement tool for Impulse Responses
• alimask · calculate and add column mask to a multiple sequence alignment
• alisp · starts alisp compiler of Franz's Allegro ANSI Common Lisp
• alisp8 · starts alisp8 compiler of Franz's Allegro ANSI Common Lisp
• alistat
• all_dists · Given a tree in Newick (*.nh) format, report distances
• allcm · force the most important Computer-Modern-fonts to be calculated
• alldc · force the most important DC-fonts to be calculated
• allec · force the most important ec-fonts to be calculated
• allegro-config · script to get information about the installed version of Allegro
• allegro-dev-tools · collection of useful tools for Allegro 4 developers
• allegro-examples · small example programs to demonstrate the power of Allegro
• allegro-makedoc · script to generate Allegro documentation
• alleleCounter · NGS copy number algorithms
• alleyoop · Valgrind memory checker front-end for GNOME
• alliance-genpat
• alliance-ocp
• alligator · RSS aggregator
• alljoyn-daemon · The AllJoyn Message Bus Daemon version: v15.04.00b
• allneeded · force the calculation of all fonts now needed
• alloc · index of FreeBSD shell built-in commands
• allpairs_master · executes All-Pairs workflow in parallel on distributed systems
• allpairs_multicore · executes All-Pairs workflow in parallel on a multicore machine
• alltray · Dock any program into the system tray.
• allversusall · Sequence similarity data from all-versus-all comparison.
• allvirtualenv · a set of wrappers to assist with manage your python virtualenvs All of the commands below are to be used on the Terminal command line.
• almanah · small GTK+ diary application
• Almighty · OAR server daemon.
• alml · manual page for alml
• alml-crlf-filter · manual page for alml
• alml-extra · manual page for alml-extra
• alml-extra-menu · manual page for alml-extra-menu
• alml-pageref · manual page for alml
• alml-sp2be · manual page for alml
• alml-sp2sp · manual page for alml
• aln2bed · aln2bed converts ALN files to a BED file
• aln2wig · convert alignments to wig files
• alogg-config · script to get information about the installed version of alogg
• alogin · Cisco login script
• ALOS_fbd2fbs · ALOS_fbd2fbs
• ALOS_fbd2fbs_SLC · ALOS_fbd2fbs_SLC
• ALOS_fbd2ss · ALOS_fbd2ss
• ALOS_merge · ALOS_merge
• ALOS_mosaic_ss · ALOS_mosaic_ss
• ALOS_mosaic_ss_2frames · ALOS_mosaic_ss_2frames
• ALOS_pre_process · ALOS_pre_process
• ALOS_pre_process_SLC · ALOS_pre_process_SLC
• ALOS_pre_process_SS · ALOS_pre_process_SS