picard-tools(1)

picard-tools1

Manipulate sam and bam files

Part of PicardCommandLine(1).

Usage

PicardCommandLine COMMAND [OPTION] ...

Overview

SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.

Picard Tools includes lots of utilities to manipulate SAM and BAM files. The whole list with a short description can be obtained by running PicardCommandLine -h.

Description of the options and parameters of all commands can be obtained by running PicardCommandLine COMMAND -h.

Releases

8 releases since Debian 6.0 (Squeeze); the text changed 3 times.

  1. 6.0
  2. 7
  3. 8
  4. 9–13

Reporting bugs

[email protected]

From picard-tools 3.3.0+dfsg-2 in Debian 13 (Trixie). Parsed by carta from the page's man source.