PicardCommandLine(1)

PicardCommandLine1

Manipulate sam and bam files

Usage

PicardCommandLine COMMAND [OPTION] ...

Overview

SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.

Picard Tools includes lots of utilities to manipulate SAM and BAM files. The whole list with a short description can be obtained by running PicardCommandLine -h.

Description of the options and parameters of all commands can be obtained by running PicardCommandLine COMMAND -h.

Releases

Unchanged in 5 releases since Debian 9 (Stretch).

  1. 9–13

Reporting bugs

[email protected]

From picard-tools 3.3.0+dfsg-2 in Debian 13 (Trixie). Parsed by carta from the page's man source.