NAME
mapMers - report statistics of mapping kmers to sequences
SYNOPSIS
mapMers {-stats|-regions|-details} -m mersize -mers mers -seq fasta
OPTIONS
- -stats
-
reports the mean, minimum, and maximum for each sequence, along with a log2 histogram of the counts
- -regions
-
reports regions with kmer coverage
- -details
-
reports the forward and reverse count in the database for each kmer in the sequence
- -m mersize
- -mers mers
-
the meryl(1) database
- -seq fasta
-
input sequence file