NAME
mapMers-depth - report information about mapping kmers to sequences
SYNOPSIS
mapMers-depth {-count|-depth|-stats} -mers MERYL -m MERSIZE -seq IN.FASTA
OPTIONS
Modes of operation
For sequence ordinal 's' and position in that sequence 'p':
- -count
-
reports the count (c) of the single kmer that starts at position (p).
-
Format: 's p c'
- -depth
-
reports the number (n) of kmers that span position (p).
-
Format: 's p n'
- -stats
-
reports the minimum (m), maximum (M), and average (a) count of all mers that span position (p). also reports total count (t) and number of kmers (n)
-
Format: 's p m M a t n'
General
- -m MERSIZE
- -mers MERYL
-
meryl(1) database
- -seq IN.FASTA
-
fasta input sequence