NAME
domainrep - Reorder DCF file to identify representative structures.
SYNOPSIS
domainrep -dcfinfile infile -node list -dcfoutfile outfile
domainrep -help
DESCRIPTION
domainrep is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:3D Structure" command group(s).
OPTIONS
Input section
- -dcfinfile infile
-
This option specifies the name of DCF file (domain classification file) (input). A ´domain classification file´ contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS.
Required section
- -node list
-
This option specifies the node fore reordering the file. Reordering can be done for any specified node in the SCOP or CATH hierarchies. For example by selecting ´Class´ entries belonging to the same Class will be reordered in turn. Default value: 1
Output section
- -dcfoutfile outfile
-
This option specifies the name of DCF file (domain classification file) (output). A ´domain classification file´ contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS. Default value: test.scop
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
domainrep is fully documented via the tfm(1) system.
AUTHOR
Debian EMBOSS Packaging Team <[email protected]>
-
Wrote the script used to autogenerate this manual page.
COPYRIGHT
Copyright © 2007 Debian EMBOSS Packaging Team
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.