NAME
chainsaw - Cut a gene tree based on a reconciliation
SYNOPSIS
chainsaw [OPTIONS] reconciled-gene-tree species-tree
DESCRIPTION
reconciled-gene-tree is the filename of the file containing trees in PRIME format. Notice that the node id is optional and if left out all species nodeswill be used recursively.
species-tree is the species tree
OPTIONS
- --help
-
Display help (this text).
- -V, --version
-
Print version and exit
- -g, --guest-tree-format primeOrHybrid|inputxml
-
The input format. Default is primeOrHybrid
- -h, --host-tree-format primeOrHybrid|inputxml
-
The input format of the host tree. Default is primeOrHybrid
- -x, --node-name=STRING
-
A named species node to cut at
- -i, --node-id=INT
-
The numerical id of a species node to cut at
EXIT STATUS
- 0
-
Successful program execution.
- 1
-
Some error occurred
URL
- The prime-phylo home page: http://prime.sbc.su.se
SEE ALSO
primeDTLSR(1), primeDLRS(1), primeGEM(1), showtree(1), reconcile(1), reroot(1), tree2leafnames(1), treesize(1)