NAME
wgsim - short read simulator
SYNOPSIS
wgsim [options] <in.ref.fa> <out.read1.fq> <out.read2.fq>
OPTIONS
- -e FLOAT
-
base error rate [0.020]
- -d INT
-
outer distance between the two ends [500]
- -s INT
-
standard deviation [50]
- -N INT
-
number of read pairs [1000000]
- -1 INT
-
length of the first read [70]
- -2 INT
-
length of the second read [70]
- -r FLOAT
-
rate of mutations [0.0010]
- -R FLOAT
-
fraction of indels [0.15]
- -X FLOAT
-
probability an indel is extended [0.30]
- -S INT
-
seed for random generator [-1]
- -h
-
haplotype mode
AUTHOR
The software was written by Heng Li <[email protected]>
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.