---
name: "vcfroc"
section: "1"
platform: "linux"
package: "libvcflib-tools"
version: "1.0.12+dfsg-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/vcfroc"
---

# vcfroc(1)

## NAME

**vcfroc**

## SYNOPSIS

**vcfroc** options \[\]

## DESCRIPTION

Generates a pseudo-ROC curve using sensitivity and specificity estimated against a putative truth set. Thresholding is provided by successive QUAL cutoffs.

## OPTIONS

-

  ```
  options:
      -t, --truth-vcf FILE      use this VCF as ground truth for ROC generation
      -w, --window-size N       compare records up to this many bp away (default 30)
      -c, --complex             directly compare complex alleles, don't parse into primitives
      -r, --reference FILE      FASTA reference file
  ```

## EXIT VALUES

- **0**

  Success

- **not 0**

  Failure

## SEE ALSO

[**vcflib**(1)](/vcflib/1.md)

## OTHER

## LICENSE

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

## AUTHORS

Erik Garrison and vcflib contributors.