vcfnullgenofields(1)

NAME

vcfnullgenofields

SYNOPSIS

vcfnullgenofields options

DESCRIPTION

Makes the FORMAT for each variant line the same (uses all the FORMAT fields described in the header). Fills out per-sample fields to match FORMAT. Expands GT values of `.' with number of alleles based on ploidy (eg: `./.' for dipolid).

OPTIONS

options:
    -p, --ploidy N   the polidy of missing/null GT fields (default=2)
    -L, --expand_GL  fill in missing GL fields with 0 values (eg: 0,0,0 for diploid 2 alleles)
Type: transformation

EXIT VALUES

0

Success

not 0

Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

AUTHORS

Erik Garrison and vcflib contributors.