---
name: "vcfhetcount"
section: "1"
platform: "linux"
package: "libvcflib-tools"
version: "1.0.12+dfsg-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/vcfhetcount"
---

# vcfhetcount(1)

## NAME

**vcfhetcount**

## SYNOPSIS

**vcfhetcount**

## DESCRIPTION

Calculate the heterozygosity rate: count the number of alternate alleles in heterozygous genotypes in all records in the vcf file

## OPTIONS

-

  ```
  outputs a count for each individual in the file
  Type: metrics
  ```

## EXIT VALUES

- **0**

  Success

- **not 0**

  Failure

## SEE ALSO

[**vcflib**(1)](/vcflib/1.md)

## OTHER

## LICENSE

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

## AUTHORS

Erik Garrison and vcflib contributors.