vcfhetcount(1)

NAME

vcfhetcount

SYNOPSIS

vcfhetcount

DESCRIPTION

Calculate the heterozygosity rate: count the number of alternate alleles in heterozygous genotypes in all records in the vcf file

OPTIONS

outputs a count for each individual in the file
Type: metrics

EXIT VALUES

0

Success

not 0

Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

AUTHORS

Erik Garrison and vcflib contributors.