---
name: "vcfgenotypes"
section: "1"
platform: "linux"
package: "libvcflib-tools"
version: "1.0.12+dfsg-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/vcfgenotypes"
---

# vcfgenotypes(1)

## NAME

**vcfgenotypes**

## SYNOPSIS

**vcfgenotypes**

## DESCRIPTION

Report the genotypes for each sample, for each variant in the VCF. Convert the numerical represenation of genotypes provided by the GT field to a human-readable genotype format.

## OPTIONS

-

  ```

  ```

## EXAMPLES

-

  ```
  Example:
        **vcfgenotypes** samples/sample.vcf
  19      111     A       C       A,C     NA00001:A/A     NA00002:A/A     NA00003:A/C
  19      112     A       G       A,G     NA00001:A/A     NA00002:A/A     NA00003:A/G
  20      14370   G       A       G,A     NA00001:G/G     NA00002:G/A     NA00003:A/A
  20      17330   T       A       T,A     NA00001:T/T     NA00002:T/A     NA00003:T/T
  20      1110696 A       G,T     A,G,T   NA00001:G/T     NA00002:G/T     NA00003:T/T
  20      1230237 T       .       T,.     NA00001:T/T     NA00002:T/T     NA00003:T/T
  20      1234567 G       GA,GAC  G,GA,GAC        NA00001:G/GA    NA00002:G/GAC   NA00003:GA/GA
  20      1235237 T       .       T,.     NA00001:T/T     NA00002:T/T     NA00003:./.
  X       10      AC      A,ATG   AC,A,ATG        NA00001:AC      NA00002:AC/A    NA00003:AC/ATG
  Type: statistics
  ```

## EXIT VALUES

- **0**

  Success

- **not 0**

  Failure

## SEE ALSO

[**vcflib**(1)](/vcflib/1.md)

## OTHER

## LICENSE

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

## AUTHORS

Erik Garrison and vcflib contributors.