---
name: "vcf-shuffle-cols"
section: "1"
platform: "linux"
package: "vcftools"
version: "0.1.16-3+b1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/vcf-shuffle-cols"
---

# vcf-shuffle-cols(1)

reorder columns

## NAME

vcf-shuffle-cols - reorder columns

## SYNOPSIS

**vcf-shuffle-cols** \[*OPTIONS*\] *-t template.vcf.gz file.vcf.gz \> out.vcf*

## DESCRIPTION

About: Reorder columns to match the order in the template VCF.

## OPTIONS

- **-t**, **--template** \<file\>

  The file with the correct order of the columns.

- **-h**, -?, **--help**

  This help message.

-