NAME
umis - tools for processing UMI RNA-tag data
SYNOPSIS
umis [OPTIONS] COMMAND [ARGS]...
OPTIONS
- --help
-
Show this message and exit.
Commands:
- add_uid
-
Adds UID:[samplebc cellbc umi] to readname for...
- bamtag
-
Convert a BAM/SAM with fastqtransformed read names to...
- cb_filter
-
Filters reads with non-matching barcodes Expects...
- cb_histogram
-
Counts the number of reads for each cellular barcode...
- demultiplex_cells
-
Demultiplex a fastqtransformed FASTQ file into a...
- demultiplex_samples
-
Demultiplex a fastqtransformed FASTQ file into a...
- fastqtransform
-
Transform input reads to the tagcounts compatible...
- fasttagcount
-
Count up evidence for tagged molecules, this...
- kallisto
-
Convert fastqtransformed file to output format...
- mb_filter
-
Filters umis with non-ACGT bases Expects formatted...
- sb_filter
-
Filters reads with non-matching sample barcodes...
- sparse
-
Convert a CSV file to a sparse matrix with rows and...
- subset_bamfile
-
Subset a SAM/BAM file, keeping only alignments from...
- tagcount
-
Count up evidence for tagged molecules
- umi_histogram
-
Counts the number of reads for each UMI Expects...
-
version
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.