NAME
truspades - truSPAdes genome assembler
SYNOPSIS
truspades [options] -o <output_dir>
DESCRIPTION
truspades is the main executable for the truSPAdes software. It assembles genomic reads given to it and places the resulting assembly in <output_dir>.
OPTIONS
Basic options
- -o <output_dir>
-
directory to store all the resulting files (required)
- --test
-
runs truSPAdes on toy dataset
-h/--help
prints this usage message
-t/--threads <int>
number of threads
- --continue
-
continue interrupted launch
- --construct-dataset
-
parse dataset from input folder
Input options
- --input-dir <directory>
-
directory with input data. Note that the directory should contain only files with reads. This option can be used several times to provide several input directories.
--dataset <file>:w: file with dataset description