NAME
trna2sap - convert tRNAscan-SE output to an ASN.1 Seq-annot object
SYNOPSIS
trna2sap [-] [-a] [-c str] [-f str] [-i filename] [-j] [-m str] [-n str] [-o filename] [-p dir] [-r dir] [-s] [-t str] [-u] [-x str]
DESCRIPTION
trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI tools.
OPTIONS
A summary of options is included below.
- -
-
Print usage message
- -a
-
Add tRNAscan-SE citation
- -c str
-
Comment
- -f str
-
Substring Filter
- -i filename
-
Single Input file (standard input by default)
- -j
-
Just produce a five-column feature table, à la trna2tbl(1).
- -m str
-
ReMark
- -n str
-
Annotation Name (normally “tRNA”).
- -o filename
-
Single Output file (standard output by default)
- -p dir
-
Path to files
- -r dir
-
Path for Results
- -s
-
Ignore Pseudo tRNAs
- -t str
-
Annotation Title (normally “tRNAscan-SE”).
- -u
-
Ignore Undetermined tRNAs
- -x str
-
File selection suffix with -p (.trna by default).
AUTHOR
The National Center for Biotechnology Information.