NAME
trees-bootstrap - Compare support for partitions between different files.
SYNOPSIS
trees-bootstrap file1 [file2 ... ] –predicates predicate file [OPTIONS]
DESCRIPTION
Compare support for partitions between different files.
INPUT OPTIONS:
- -h, –help
-
Produce help message.
- -s arg (=10%), –skip arg (=10%)
-
Number of trees to skip.
- -u arg, –until arg
-
Read until this number of trees.
- -m arg, –max arg
-
Thin tree samples down to this number of trees.
- -x arg, –subsample arg
-
Factor by which to sub-sample.
- –predicates arg
-
Predicates to examine.
- –min-support arg (=0.1)
-
Minimum value of predicates to consider interesting..
- -V, –verbose
-
Output more log messages on stderr.
BLOCK BOOTSTRAP OPTIONS:
- –bootstrap
-
Do block bootstrapping to get a CI on the posterior probabilities.
- –samples arg (=10000)
-
Number of bootstrap samples.
- –pseudocount arg (=1)
-
Extra 0/1 to add to bootstrap samples.
- –blocksize arg
-
Block size to use in block boostrap.
- –seed arg
-
Random seed.
REPORTING OPTIONS:
- –separation arg (=0)
-
Only report trees/partitions if they differ by this many LODs
- –confidence arg (=0.95)
-
Width of confidence intervals
- –LOD-table arg
-
Write the partitions LOD10’s to a file.
REPORTING BUGS:
BAli-Phy online help: ⟨http://www.bali-phy.org/docs.php⟩\c .
Please send bug reports to ⟨[email protected]⟩\c .
AUTHORS
Benjamin Redelings.