NAME
tree-mean-lengths - Compute the mean lengths for branches in the given topology.
SYNOPSIS
tree-mean-lengths [OPTIONS] tree file1 [file2 ...]
DESCRIPTION
Compute the mean lengths for branches in the given topology.
ALLOWED OPTIONS:
- -h, –help
-
produce help message
- -T arg, –tree arg
-
tree to re-root
- –files arg
-
tree samples to examine
- -s arg (=0), –skip arg (=0)
-
number of tree samples to skip
- -u arg, –until arg
-
Read until this number of trees.
- –ignore arg
-
Comma-separated taxa to remove
- –simple
-
Ignore all branches not in the query tree
- -x arg (=1), –subsample arg (=1)
-
factor by which to sub-sample
- –var
-
report standard deviation of branch lengths instead of mean
- –no-node-lengths
-
ignore branches not in the specified topology
- –safe
-
Don’t die if no trees match the topology
- –show-node-lengths
-
Output special format
- -V, –verbose
-
Output more log messages on stderr.
REPORTING BUGS:
BAli-Phy online help: ⟨http://www.bali-phy.org/docs.php⟩\c .
Please send bug reports to ⟨[email protected]⟩\c .
AUTHORS
Benjamin Redelings.