---
name: "transformseq"
section: "1"
platform: "linux"
package: "python3-weblogo"
version: "3.8.0-2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/transformseq"
---

# transformseq(1)

convert multiple sequence alignments from one format to another

## NAME

transformseq - convert multiple sequence alignments from one format to another

## SYNOPSIS

**transformseq** \[*options*\]  *\< sequence\_data.fa \> sequence\_logo.eps*

## DESCRIPTION

-

  A tool for converting multiple sequence alignments from one format to

another.

## OPTIONS

- **--version**

  show program's version number and exit

- **-h** **--help**

  show this help message and exit

-

  Input/Output Options:

- **-f** **--fin** FILENAME

  Sequence input file (default: stdin)

- **--format-in** FORMAT

  Multiple sequence alignment format: (clustal, fasta, plain, msf, genbank, nbrf, nexus, phylip, stockholm, intelligenetics, table, array)

- **-o** **--fout** FILENAME

  Output file (default: stdout)

- **-F** **--format-out** FORMAT

  Multiple sequence alignment output format: (clustal, fasta, plain, intelligenetics, table, array) (Default: fasta)

-

  Transformations:

- **--seg**

  Mask low complexity regions in protein sequences.

- **--subsample** FRACTION

  Return a random subsample of the sequences.

- **--reverse**

  reverse sequences

- **--complement**

  complement DNA sequences