NAME
transformseq - convert multiple sequence alignments from one format to another
SYNOPSIS
transformseq [options] < sequence_data.fa > sequence_logo.eps
DESCRIPTION
-
A tool for converting multiple sequence alignments from one format to
another.
OPTIONS
- --version
-
show program's version number and exit
- -h --help
-
show this help message and exit
-
Input/Output Options:
- -f --fin FILENAME
-
Sequence input file (default: stdin)
- --format-in FORMAT
-
Multiple sequence alignment format: (clustal, fasta, plain, msf, genbank, nbrf, nexus, phylip, stockholm, intelligenetics, table, array)
- -o --fout FILENAME
-
Output file (default: stdout)
- -F --format-out FORMAT
-
Multiple sequence alignment output format: (clustal, fasta, plain, intelligenetics, table, array) (Default: fasta)
-
Transformations:
- --seg
-
Mask low complexity regions in protein sequences.
- --subsample FRACTION
-
Return a random subsample of the sequences.
- --reverse
-
reverse sequences
- --complement
-
complement DNA sequences