NAME
transformix - manual page for transformix version: 5.2.0
DESCRIPTION
transformix version: 5.2.0
transformix applies a transform on an input image and/or generates a deformation field. The transform is specified in the transform-parameter file.
--help, -h displays this message and exit
- --version
-
output version information and exit
Call transformix from the command line with mandatory arguments:
- -out
-
output directory
- -tp
-
transform-parameter file, only 1
Optional extra commands:
- -in
-
input image to deform
- -def
-
file containing input-image points; the point are transformed according to the specified transform-parameter file use "-def all" to transform all points from the input-image, which effectively generates a deformation field.
- -jac
-
use "-jac all" to generate an image with the determinant of the spatial Jacobian
- -jacmat
-
use "-jacmat all" to generate an image with the spatial Jacobian matrix at each voxel
-loglevel set the log level to "off", "error", "warning", or "info" (default),
-priority set the process priority to high, abovenormal, normal (default),
-
belownormal, or idle (Windows only option)
- -threads
-
set the maximum number of threads of transformix
At least one of the options "-in", "-def", "-jac", or "-jacmat" should be given.
The transform-parameter file must contain all the information necessary for transformix to run properly. That includes which transform to use, with which parameters, etc. For a usable transform-parameter file, run elastix, and inspect the output file "TransformParameters.0.txt".
Need further help? Please check:
-
* the elastix website: https://elastix.dev * the source code repository site: https://github.com/SuperElastix/elastix * the discussion forum: https://groups.google.com/g/elastix-imageregistration