---
name: "tradis_gene_insert_sites"
section: "1p"
platform: "linux"
package: "bio-tradis"
version: "1.4.5+dfsg2-2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/tradis_gene_insert_sites/1p"
---

# tradis\_gene\_insert\_sites(1p)

Generate insertion site details from TraDIS pipeline plots

## NAME

tradis\_gene\_insert\_sites - Generate insertion site details from TraDIS pipeline plots

## VERSION

version 1.4.5

## SYNOPSIS

## DESCRIPTION

This script is for TRADIS analysis. It takes in a plot file created by the TRADIS pathogen informatics pipeline, and an embl file of annotation. It then outputs a tab delimited file with the insert site details. This is then used as input to an R script to calculate essentialit y.

## NAME

tradis\_gene\_insert\_sites.pl

## CONTACT

path-help@sanger.ac.uk Original author: Lars Barquist

## METHODS

## AUTHOR

Carla Cummins \<path-help@sanger.ac.uk\>

## COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

```
  The GNU General Public License, Version 3, June 2007
```