tigr-glimmer1

Usage

Overview

This manual page documents briefly the tigr-glimmer wrapper to the TIGR Glimmer programs. This manual page was written for the Debian GNU/Linux distribution because upstream does not provide this wrapper and it was invented for Debian to avoid conflicts with other packages that might cause a name space pollution.

tigr-glimmer is just a wrapper that invokes the various programs in the TIGR Glimmer software package. You can get more detailed documentation in /usr/share/doc/tigr-glimmer. Please note that the documentation there is a part of the former version Glimmer 2. The version Glimmer 3 has some features that were described in the notes.pdf document inside the documentation directory.

The following programs are included: anomaly, build-fixed, build-icm, entropy-profile, entropy-score, extract, glimmer3, long-orfs, multi-extract, score-fixed, start-codon-distrib, test, uncovered and window-acgt.

Options

There are no options.

Examples

tigr-glimmer build-icm

tigr-glimmer long-orfs