NAME
tff_visualize_overlap.py - display a tractogram and its density map
DESCRIPTION
usage: tff_visualize_overlap.py [-h] [--remove_invalid]
-
IN_TRACTOGRAM reference
Display a tractogram and its density map (computed from Dipy) in rasmm, voxmm and vox space with its bounding box.
positional arguments:
- IN_TRACTOGRAM
-
Tractogram filename. Format must be one of trk, tck, vtk, fib, dpy, trx.
- reference
-
Reference anatomy for tck/vtk/fib/dpy file support (nii or nii.gz).
options:
- -h, --help
-
show this help message and exit
- --remove_invalid
-
Removes invalid streamlines to avoid the density_mapfunction to crash.