---
name: "surankco-training"
section: "1"
platform: "linux"
package: "surankco"
version: "0.0.r5+dfsg-4"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/surankco-training"
---

# surankco-training(1)

training of random forest using contig features and contig scores

## NAME

surankco-training - training of random forest using contig features and contig scores

## SYNOPSIS

**surankco-training** \[*options*\]

## DESCRIPTION

Training of random forest using contig features from [surankco-feature(1)](/surankco-feature/1.md) and contig scores from [surankco-score(1)](/surankco-score/1.md).

## OPTIONS

**-f** FEATURES, **--features**=*FEATURES*

-

  Indicate a list of surankco feature files (comma separated), correct suffixes are mandatory ("\*.features.txt")

**-d** DIRECTORY, **--directory**=*DIRECTORY*

-

  Indicate a directory containing surankco feature files ("\*.features.txt")

**-o** OUTPUT.FILENAME, **--output**.filename=OUTPUT.FILENAME

-

  Indicate a name for the export of the random forest classifiers (default = "surankco\_rfs.RData")

**-e** EXPONENTIAL.QUANTILE, **--exponential**.quantile=EXPONENTIAL.QUANTILE

-

  Indicate an exponential distribution quantile to divide scores (default: 0.25)

**-m** MANUAL.THRESHOLDS, **--manual**.thresholds=MANUAL.THRESHOLDS

-

  Indicate manual thresholds instead of quantiles, one per score each (comma separated) in the same order as in the score file

**-h**, **--help**

-

  Show this help message and exit

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.