---
name: "suitename"
section: "1"
platform: "linux"
package: "suitename"
version: "0.4.130509+git20210223.ebb1325-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/suitename"
---

# suitename(1)

categorize each suite in an RNA backbone as belonging to either one of 53 defined types or as outlier

## NAME

suitename - categorize each suite in an RNA backbone as belonging to either one of 53 defined types or as outlier

## SYNOPSIS

**suitename** **-flags** \<stdin \>stdout

## DESCRIPTION

Suitename is a program that supports the ROC RNA Ontology Consortium consensus RNA backbone nomenclature and conformer-list development.

From dihedral-angle input for a specific RNA structure (usually from Dangle), Suitename categorizes the RNA backbone geometry of each suite (the sugar-to-sugar version of a residue) either as an outlier ("!!") or as belonging to one of the 53 defined conformer bins. The output is either a one-line-per-suite report, or a linear conformer string (as shown below the image here) in one of several variant formats. Suitename is built into MolProbity, producing entries in the multi-criterion chart for an RNA model and also a suitestring file.

## OPTIONS

-

  output flags: \[ **-report** \|\| **-string** \|\| **-kinemage** \]

-

  default:  **-report** **-residuein**

-

  input flags: \[ **-residuein** \|\| **-suitein**  \]

-

  flags: \[ **-residuein** \[ **-pointIDfields** # \] \] default#==6

-

  OR flags: \[ **-suitein** \[ **-anglefields** # \] \] default#==9

-

  defaults: **-residuein**  **-pointIDfields** 6 as made by dangle

-

  dangle "alpha, beta, gamma, delta, epsilon, zeta" in.pdb \>out.dngl

-

  label : model : chain : number : ins : type : alpha : beta : gamma : delta : epsilon : zeta

-

  **-suitein** presumes point records from a kinemage {pointID} 7 or 9 anglefields {ptID} \[chi\] deltam epsilon zeta alpha beta gamma delta \[chi\]

Note that all other kinemage lines must be stripped off.

-

  **-thetaeta**  kinemage labels theta,eta instead of chi-1,chi

Note dangle trick to make theta,...,eta suites directly

-

  flag: **-report** \[ **-chart** \] suites in order of input, suiteness summary at end

-

  ( **-chart** : NO summary at end, for MolProbity multichart)

-

  flag: **-string** 3 character per suite string in order of input

-

  20 per line, ptID of n\*20th at end of line

-

  flag: **-nosequence** only suite names, no Base sequence character

-

  flag: **-oneline** string all one line, no point IDs

-

  flag: **-overlap** 20 per line: overlap 10 each line, 10 new per line

-

  flag: **-kinemage** kinemage of clusters grouped by pucker,pucker ...

-

  group {delta,delta},subgroup {gamma},list {cluster name} assigns to designated wannabe clusters, default: wannabe

-

  flag: **-nowannabe**   to not assign them

-

  \[ **-power** #.#\] default# 3.00 multi-dimension distance calc

-

  \[ **-test** \] dump cluster centers, halfwidths,... to stderr

cluster averages version: 070506

cluster half-widths version: 070328

axes limits version: 070326

suitename is not paying attention to chains...