---
name: "subread-fullscan"
section: "1"
platform: "linux"
package: "subread"
version: "2.0.8+dfsg-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/subread-fullscan"
---

# subread-fullscan(1)

toolkit for processing next-gen sequencing data

## NAME

subread-fullscan - toolkit for processing next-gen sequencing data

## DESCRIPTION

subread-fullscan Version 2.0.4

-

  This program scans the entire genome to find all high-similarity locations to

a specified read.

Usage:

-

  ./subread-fullscan \[options\] **-i** \<index\_name\> \<read\_string\>

Required arguments:

- **-i** \<string\>

  Base name of the index.

- read\_string

  The read bases.

Optional arguments:

- **-m** \<float\>

  The minimum fraction of matched bases in the read, 0.8 by default

## AUTHOR

 This manpage was written by Alexandre Mestiashvili for the Debian distribution and\
  can be used for any other usage of the program.