carta
srf2fasta(1)

srf2fasta1

Converts srf files to fasta format

Usage

srf2fasta [-C] srf_archive

Overview

srf2fasta extracts sequences from an SRF archive and writes them in fasta format to stdout.

Options

-C

Masks out sequences tagged as bad quality.

Examples

To extract only the good quality sequences from runX.srf into runX.fasta.

    srf2fasta -C runX.srf > runX.fasta

Author

James Bonfield, Wellcome Trust Sanger Institute

From staden-io-lib-utils 1.15.0-1.1+b2 in Debian 13 (Trixie). Parsed by carta from the page's man source.