---
name: "spliced_bam2gff"
section: "1"
platform: "linux"
package: "pinfish"
version: "0.1.0+ds-4+b8"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/spliced_bam2gff"
---

# spliced\_bam2gff(1)

Collection of tools to annotate genomes using long read transcriptomics data

## NAME

spliced\_bam2gff - Collection of tools to annotate genomes using long read transcriptomics data

## DESCRIPTION

### Usage of spliced\_bam2gff:

- **-M**

  Input is from minimap2.

- **-V**

  Print out version.

- **-g**

  Use strand tag as feature orientation then read strand if not available.

- **-h**

  Print out help message.

- **-s**

  Use read strand (from BAM flag) as feature orientation.

**-t** int

-

  Number of cores to use. (default 4)

## AUTHOR

 This manpage was written by Nilesh Patra for the Debian distribution and\
  can be used for any other usage of the program.