slice_fasta_gff1

Slice subsequences from an input fasta file

Usage

slice_fasta [options] <FASTA file> <GFF file>

Overview

slice_fasta from FSA 1.15.9

Options

-t, --type <string>: only look at features of particular type

Slice subsequences from an input FASTA file. Assumes 1-based, fully-closed coordinates. If no strand information is available, then the + strand is assumed. If the - strand is requested, then the subsequence is pulled out and then reverse-complemented.

Assumes a DNA alphabet.