---
name: "slice_fasta_gff"
section: "1"
platform: "linux"
package: "fsa"
version: "1.15.9+dfsg-6"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/slice_fasta_gff"
---

# slice\_fasta\_gff(1)

Slice subsequences from an input FASTA file

## NAME

slice\_fasta\_gff - Slice subsequences from an input FASTA file

## SYNOPSIS

**slice\_fasta** \[*options*\] *\<FASTA file\> \<GFF file\>*

## DESCRIPTION

slice\_fasta from FSA 1.15.9

## OPTIONS

- **-t**, **--type** \<string\>

  only look at features of particular type

Slice subsequences from an input FASTA file. Assumes 1-based, fully-closed coordinates. If no strand information is available, then the + strand is assumed. If the - strand is requested, then the subsequence is pulled out and then reverse-complemented.

Assumes a DNA alphabet.

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.