slice_fasta1
Slice a subsequence from an input fasta file
Usage
slice_fasta <FASTA
file>
<sequence
name>
<start>
<end>
<strand>
Overview
slice_fasta from FSA 1.15.9
Slice a subsequence from an input FASTA file. Assumes 1-based, fully-closed coordinates. If <strand> is omitted, then the + strand is assumed. If the - strand is requested, then the subsequence is pulled out and then reverse-complemented.