simplegraph.pl1
Provides dotplot/chaos style plot of murasaki alignments
Usage
simplegraph.pl <murasaki
ailgnment
file>
[-output=<output
prefix>]
Options
- murasaki alignment file The main one outputted by murasaki.
- --output Prefix for output files.
- --nostitch Don't draw lines for stitch file breaks.
-
--signed -
Leave signedness alone (otherwise absolute coordinates are drawn)
-
--keepplot -
Keep the file containing the gnuplot commands (helpful if you want to run gnuplot interactively).
-
--interactive=<S> -
Run gnuplot interactively for some set of sequences <S> (default all)
- --order=<S> Reorder input sequences on the fly (or consider only a subset)
-
<S> can be specified as a simple permutation like 201 (which would mean sequence 2, then 0, then 1), or if you have more than 10 sequences you can separate digits with any non-digit character (eg: "2,0,1").
Overview
Draws graphs of murasaki alignments.
History
- Debian 13 (Trixie): the text shown here
- Debian 12 (Bookworm)
- Debian 11 (Bullseye)
- Debian 10 (Buster)
- Debian 9 (Stretch)